About the Thalassiosira pseudonana genome
Thalassiosira pseudonanais a centric diatom that belongs to the diverse algal group, likely arose from a common secondary endosymbiotic event, involving at least five different genomes. Diatoms are involved in various biogeochemical cycles most notably involving carbon, nitrogen and silicon, and contribute 30% to 40% of marine primary productivity. Consequently, they are responsible for approximately one fifth of the oxygen that is generated each year through global photosynthesis.
Taxonomy ID 296543
Data source JGI
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
Download alignments (EMF)
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
T. pseudonana ESTs were sequenced from 7 different cDNA libraries. These ESTs were aligned to the genome using exonerate.