Pythium irregulare (pir_scaffolds_v1)

About the Pythium irregulare Genome

Pythium irregulare is highly pathogenic to a wide range of cereal and legume hosts, causing significant loss in yield and vigor.It is a soilborne pathogen found world wide on ~200 hosts. Like most members of the Pythium species, it causes damping off (i.e. blight) and root rot of plants located in both greenhouses and the field especially under moist conditions that favor the spread of this pathogen through zoospores. While P. irregulare can be isolated by itself from a host, it is often found in conjunction with another Pythium species.

It belongs to the group oomycetes which was originally classified among the fungi, due to its morphological and functional similarities. They are now classifed as protists based on modern insights on phylogentic relationship with photosynthetic organisms such as brown algae and diatoms.

Taxonomy ID 1223557

Data source Pythium Genome Database

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Genomic alignments [23] [Show»«Hide
Pythium irregulare : Albugo laibachiiTRANSLATED_BLAT_NET | stats
Pythium irregulare : Bigelowiella natansTRANSLATED_BLAT_NET | stats
Pythium irregulare : Emiliania huxleyiTRANSLATED_BLAT_NET | stats
Pythium irregulare : Entamoeba histolyticaTRANSLATED_BLAT_NET | stats
Pythium irregulare : Giardia lambliaTRANSLATED_BLAT_NET | stats
Pythium irregulare : Guillardia theta CCMP2712TRANSLATED_BLAT_NET | stats
Pythium irregulare : Hyaloperonospora arabidopsidisTRANSLATED_BLAT_NET | stats
Pythium irregulare : Leishmania majorTRANSLATED_BLAT_NET | stats
Pythium irregulare : Paramecium tetraureliaTRANSLATED_BLAT_NET | stats
Pythium irregulare : Phaeodactylum tricornutumTRANSLATED_BLAT_NET | stats
Pythium irregulare : Phytophthora infestansTRANSLATED_BLAT_NET | stats
Pythium irregulare : Phytophthora kernoviaeTRANSLATED_BLAT_NET | stats
Pythium irregulare : Phytophthora lateralisTRANSLATED_BLAT_NET | stats
Pythium irregulare : Phytophthora parasiticaTRANSLATED_BLAT_NET | stats
Pythium irregulare : Phytophthora ramorumTRANSLATED_BLAT_NET | stats
Pythium irregulare : Pythium aphanidermatumTRANSLATED_BLAT_NET | stats
Pythium irregulare : Pythium arrhenomanesTRANSLATED_BLAT_NET | stats
Pythium irregulare : Pythium iwayamaiTRANSLATED_BLAT_NET | stats
Pythium irregulare : Pythium ultimumTRANSLATED_BLAT_NET | stats
Pythium irregulare : Pythium vexansTRANSLATED_BLAT_NET | stats
Pythium irregulare : Tetrahymena thermophilaTRANSLATED_BLAT_NET | stats
Pythium irregulare : Toxoplasma gondiiTRANSLATED_BLAT_NET | stats
Pythium irregulare : Trypanosoma bruceiTRANSLATED_BLAT_NET | stats
]

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species