Pythium ultimum (pug)

About the Pythium ultimum genome

Pythium ultimum is a ubiquitous oomycete plant pathogen responsible for a variety of diseases on a broad range of crop and ornamental species. Analysis of the Pythium ultimum genome sequence suggests that not all oomycete plant pathogens contain a similar 'toolkit' for survival and pathogenesis. Pythium ultimum has a distinct effector repertoire compared to Phytophthora spp. The repertoire of metabolic genes within the Pythium ultimum genome reflects its pathogenic lifestyle. It is an opportunistic pathogen of young seedlings and plant roots with little or no cuticle or heavily suberized tissue, consistent with lack of cutinase encoding genes. It is a poor competitor against secondary invaders of damaged plant tissues and soil organisms with better saprobic ability.

Taxonomy ID 431595

Data source Pythium Genome Database

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Genomic alignments [23] [Show»«Hide
Pythium ultimum : Albugo laibachiiTRANSLATED_BLAT_NET | stats
Pythium ultimum : Bigelowiella natansTRANSLATED_BLAT_NET | stats
Pythium ultimum : Emiliania huxleyiTRANSLATED_BLAT_NET | stats
Pythium ultimum : Entamoeba histolyticaTRANSLATED_BLAT_NET | stats
Pythium ultimum : Giardia lambliaTRANSLATED_BLAT_NET | stats
Pythium ultimum : Guillardia theta CCMP2712TRANSLATED_BLAT_NET | stats
Pythium ultimum : Hyaloperonospora arabidopsidisTRANSLATED_BLAT_NET | stats
Pythium ultimum : Leishmania majorTRANSLATED_BLAT_NET | stats
Pythium ultimum : Paramecium tetraureliaTRANSLATED_BLAT_NET | stats
Pythium ultimum : Phaeodactylum tricornutumTRANSLATED_BLAT_NET | stats
Pythium ultimum : Phytophthora infestansTRANSLATED_BLAT_NET | stats
Pythium ultimum : Phytophthora kernoviaeTRANSLATED_BLAT_NET | stats
Pythium ultimum : Phytophthora lateralisTRANSLATED_BLAT_NET | stats
Pythium ultimum : Phytophthora parasiticaTRANSLATED_BLAT_NET | stats
Pythium ultimum : Phytophthora ramorumTRANSLATED_BLAT_NET | stats
Pythium ultimum : Pythium aphanidermatumTRANSLATED_BLAT_NET | stats
Pythium ultimum : Pythium arrhenomanesTRANSLATED_BLAT_NET | stats
Pythium ultimum : Pythium irregulareTRANSLATED_BLAT_NET | stats
Pythium ultimum : Pythium iwayamaiTRANSLATED_BLAT_NET | stats
Pythium ultimum : Pythium vexansTRANSLATED_BLAT_NET | stats
Pythium ultimum : Tetrahymena thermophilaTRANSLATED_BLAT_NET | stats
Pythium ultimum : Toxoplasma gondiiTRANSLATED_BLAT_NET | stats
Pythium ultimum : Trypanosoma bruceiTRANSLATED_BLAT_NET | stats
]

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Other Data

Transcriptomics data used to investigate the pathogenicity mechanism (SRP002690) was added as BAM tracks

About this species