
Plasmodium berghei - GCA_900002375.2 Assembly and Gene Annotation
About the Plasmodium berghei genome
Plasmodium berghei is one of four malarial parasites that infect rodents. P. berghei infects murine rodents from Central Africa, and are also infectious to laboratory rodents and easily maintained by Anopheles stephensi in the laboratory. It serves as a good model for the human parasites with which it shares many similarities in essential aspects of structure, biochemistry and life cycle.
Assembly
P. berghei has an estimated genome size of 18.5 Mb with a karyotype of 14 chromosomes ranging in size from 0.6 Mb to 3.8 Mb. The G+C content is approximately 22%. The assembly presented has been imported from INSDC.
Annotation
The annotation has been imported from VEuPathDB.
References
- A comprehensive survey of the Plasmodium life cycle by genomic,
transcriptomic, and proteomic
analyses.
Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK et al. 2005. Science. 307:82-86.
Statistics
Summary
Assembly | GCA900002375v2, INSDC Assembly GCA_900002375.2, |
Database version | 114.2 |
Golden Path Length | 18,780,606 |
Genebuild by | VEuPathDB PlasmoDB |
Genebuild method | Import |
Data source | GeneDB |
Gene counts
Coding genes | 4,945 |
Non coding genes | 177 |
Small non coding genes | 177 |
Pseudogenes | 132 |
Gene transcripts | 5,267 |