Phytophthora lateralis Assembly and Gene Annotation
Phytophthora lateralis is a soil-borne plant pathogen that causes cedar root disease in Port Orford cedar trees (Chamaecyparis lawsoniana).
Genome sequencing was carried out by the University of Exeter and the Agri-Food & Biosciences Institute (AFBI). The genome assembly provided was imported from that submitted to INSDC as AOFI00000000.
Protein coding gene annotation was done by the University of Exeter and the Agri-Food & Biosciences Institute (AFBI), was imported from the data provided by the Exeter Centre for Emerging Plant Disease.
Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.
General information about this species can be found in Wikipedia.
|Assembly||MPF4_v1.0, INSDC Assembly GCA_000318465.1, Jun 2013|
|Golden Path Length||43,981,379|
|Data source||Exeter Centre for Emerging Plant Diseases|
|Non coding genes||105|
|Small non coding genes||104|
|Misc non coding genes||1|