Phytophthora lateralis (MPF4_v1.0)

Phytophthora lateralis Assembly and Gene Annotation

Phytophthora lateralis is a soil-borne plant pathogen that causes cedar root disease in Port Orford cedar trees (Chamaecyparis lawsoniana).

Genome sequencing was carried out by the University of Exeter and the Agri-Food & Biosciences Institute (AFBI). The genome assembly provided was imported from that submitted to INSDC as AOFI00000000.

Protein coding gene annotation was done by the University of Exeter and the Agri-Food & Biosciences Institute (AFBI), was imported from the data provided by the Exeter Centre for Emerging Plant Disease.

Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyMPF4_v1.0, INSDC Assembly GCA_000318465.1, Jun 2013
Database version104.1
Golden Path Length43,981,379
Genebuild byEXCEPD
Genebuild methodImport
Data sourceExeter Centre for Emerging Plant Diseases

Gene counts

Coding genes12,219
Non coding genes105
Small non coding genes104
Misc non coding genes1
Pseudogenes15
Gene transcripts12,339

About this species