Hyaloperonospora arabidopsidis (HyaAraEmoy2_2.0)

Hyaloperonospora arabidopsidis Assembly and Gene Annotation

About the Hyaloperonospora arabidopsidis genome

Hyaloperonospora arabidopsidis is a pathogen of the model plant Arabidopsis thaliana and food crops belonging to the family Cruciferae and cause downy mildew disease. They belong to the class Oomycetes, belong to the kingdom Stramenopila, which includes brown algae and diatoms. Although they share morphological and ecological similarities with fungi, they evolved independently to colonize plants. They belong to a group of “downy mildew” pathogens, comprising more than 800 species that cause disease on hundreds of plant species.

Assembly

The is genome assembly is available from the EMBL/Genbank/DDBJ databases under the accession GCA_000173235.2.

Annotation

The protein coding genes in this site are a direct import of annotation available at VBI Microbial database( V8.3.2). Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 007); additional analysis tools have also been applied.

References

  1. Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome.
    Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W et al. 2010. Science. 330:1549-1551.

Picture credit: Courtesy Dr. Geoff McFadden, University of Melbourne, Australia.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyHyaAraEmoy2_2.0, INSDC Assembly GCA_000173235.2, Apr 2010
Database version92.1
Base Pairs78,897,814
Golden Path Length78,897,814
Genebuild byVBI
Genebuild methodImport from VBI Microbial Database
Data sourceVBI Microbial Database V 5.0

Gene counts

Coding genes14,321
Non coding genes257
Small non coding genes257
Pseudogenes28
Gene transcripts14,606

About this species