Hyaloperonospora arabidopsidis Assembly and Gene Annotation
About the Hyaloperonospora arabidopsidis genome
Hyaloperonospora arabidopsidis is a pathogen of the model plant Arabidopsis thaliana and food crops belonging to the family Cruciferae and cause downy mildew disease. They belong to the class Oomycetes, belong to the kingdom Stramenopila, which includes brown algae and diatoms. Although they share morphological and ecological similarities with fungi, they evolved independently to colonize plants. They belong to a group of “downy mildew” pathogens, comprising more than 800 species that cause disease on hundreds of plant species.
The is genome assembly is available from the EMBL/Genbank/DDBJ databases under the accession GCA_000173235.2.
The protein coding genes in this site are a direct import of annotation available at VBI Microbial database( V8.3.2). Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 007); additional analysis tools have also been applied.
- Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome.
Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W et al. 2010. Science. 330:1549-1551.
Picture credit: Courtesy Dr. Geoff McFadden, University of Melbourne, Australia.
General information about this species can be found in Wikipedia.
|Assembly||HyaAraEmoy2_2.0, INSDC Assembly GCA_000173235.2, Apr 2010|
|Golden Path Length||78,897,814|
|Genebuild method||Import from VBI Microbial Database|
|Data source||VBI Microbial Database V 5.0|
|Non coding genes||257|
|Small non coding genes||257|