Phytophthora kernoviae (PhyKer238_432v1)

Phytophthora kernoviae Assembly and Gene Annotation

Phytophthora kernoviae is a plant pathogen that mainly infects European beech (Fagus sylvatica) and Rhododendron ponticum.

Genome sequencing was carried out by the University of Exeter and Science and Advice for Scottish Agriculture (SASA). The genome assembly provided was imported from that submitted to INSDC as AOFI00000000.

Protein coding gene annotation was done by the University of Exeter and Science and Advice for Scottish Agriculture (SASA) and the data was provided by Exeter Centre for Emerging Plant Disease.

Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyPhyKer238/432v1, INSDC Assembly GCA_000333075.1, Jan 2013
Database version104.1
Golden Path Length43,208,681
Genebuild byEXCEPD
Genebuild methodImport
Data sourceExeter Centre for Emerging Plant Diseases

Gene counts

Coding genes10,847
Non coding genes87
Small non coding genes78
Long non coding genes1
Misc non coding genes8
Pseudogenes20
Gene transcripts10,954

About this species