Phaeodactylum tricornutum (ASM15095v2)

This genome has been re-annotated through a collaboration between Ensembl Genomes @ EMBL-EBI, the Ecole Normale Superieure, Paris and the J. Craig Venter Institute, San Diego

About Phaeodactylum tricornutum CCAP 1055/1

Phaeodactylum tricornutum is a diatom, the only species in the genus Phaeodactylum. Unlike other diatoms, P. tricornutum can exist in different morphotypes and changes in cell shape can be stimulated by environmental conditions. This feature can be used to explore the molecular basis of cell shape control and morphogenesis. Unlike most diatoms, P. tricornutum can grow in the absence of silicon and can survive without making silicified frustules. This provides opportunities for experimental exploration of silicon-based nanofabrication in diatoms.

Picture credit: Creative Commons Attribution 2.5 via Wikimedia Commons (Image source) Taxonomy ID 556484

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Taxonomy ID 556484

Data source Ensembl Protists

More information and statistics

Genome assembly: ASM15095v2

More information and statistics

Download DNA sequence (FASTA)

Display your data in Ensembl Protists

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

What can I find? Short sequence variants.

More about variation in Ensembl Protists

Download all variants - GVF - VCF - VEP

Variant Effect Predictor

Other Data

P. tricornutum ESTs were sequenced from 16 different cDNA libraries. These libraries were constructed from cells cultured under different conditions in order to investigate the molecular basis for responses to various nutrient and stress conditions and changes in cell morphotype. These ESTs were aligned to the genome using exonerate.