Pythium aphanidermatum (pag1_scaffolds_v1)

About the Pythium aphanidermatum Genome

Pythium aphanidermatum is a plant pathogen causing damping off, root and stem rots, and blights of grasses and fruits. P. aphanidermatum have wide rage of hosts, including the economically important crops like beets, pepper and cotton. It is a major cause of root rot in papaya. It requires warmer temperatures, it is often seen in greenhouses. P. aphanidermatum is responsible for pre and post emergence damping off. Pre-emergence damping off is when the seed is infected prior to germination. This can result in poor or no germination, and is observable as a browning or rotting of the seed. Post emergence damping off takes place after germination and results in a thinning, water-soaked stem near the plant collar, which eventually causes the collapse of the plant.

It belongs to the group oomycetes which was originally classified among the fungi, due to its morphological and functional similarities. They are now classifed as protists based on modern insights on phylogentic relationship with photosynthetic organisms such as brown algae and diatoms.

Taxonomy ID 1223555

Data source Pythium Genome Database

More information and statistics

Genome assembly: pag1_scaffolds_v1

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Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

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Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

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Phylogenetic overview of gene families

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Genomic alignments [21] [Show»«Hide
Pythium aphanidermatum : Albugo laibachiiTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Bigelowiella natansTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Emiliania huxleyiTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Entamoeba histolyticaTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Giardia lambliaTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Guillardia theta CCMP2712TRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Hyaloperonospora arabidopsidisTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Paramecium tetraureliaTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Phaeodactylum tricornutumTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Phytophthora infestansTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Phytophthora kernoviaeTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Phytophthora lateralisTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Phytophthora parasiticaTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Phytophthora ramorumTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Pythium arrhenomanesTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Pythium irregulareTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Pythium iwayamaiTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Pythium ultimumTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Pythium vexansTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Tetrahymena thermophilaTRANSLATED_BLAT_NET | stats
Pythium aphanidermatum : Trypanosoma bruceiTRANSLATED_BLAT_NET | stats


This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species