Phytophthora parasitica (Phyt_para_P1569_V1)

Phytophthora parasitica Assembly and Gene Annotation

The oomycete Phytophthora parasitica is a very broad host range pathogen that causes destructive diseases of a wide variety of crop plants including tomato, pepper, potato, tobacco, cacao, banana, citrus, walnut, almond, a wide variety of nursery and ornamental plants, and forest ecosystems.

Genome sequencing was performed by the Phytophthora parasitica Assembly Dev initiative, Broad Institute and imported from the assembly submitted to INSDC as the WGS project ADVJ01000000.

Protein coding gene annotation was imported by that provided by the Phytophthora parasitica Assembly Dev initiative, Broad Institute.

Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyPhyt_para_P1569_V1, INSDC Assembly GCA_000365505.1, Dec 2013
Database version104.1
Golden Path Length55,229,644
Genebuild byBroad
Genebuild methodImport
Data sourceBroad Insititute

Gene counts

Coding genes23,159
Non coding genes106
Small non coding genes105
Misc non coding genes1
Pseudogenes40
Gene transcripts28,263

About this species