Phytophthora kernoviae Assembly and Gene Annotation
Phytophthora kernoviae is a plant pathogen that mainly infects European beech (Fagus sylvatica) and Rhododendron ponticum.
Genome sequencing was carried out by the University of Exeter and Science and Advice for Scottish Agriculture (SASA). The genome assembly provided was imported from that submitted to INSDC as AOFI00000000.
Protein coding gene annotation was done by the University of Exeter and Science and Advice for Scottish Agriculture (SASA) and the data was provided by Exeter Centre for Emerging Plant Disease.
Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
Assembly | PhyKer238/432v1, INSDC Assembly GCA_000333075.1, Jan 2013 |
Database version | 112.1 |
Golden Path Length | 43,208,681 |
Genebuild by | EXCEPD |
Genebuild method | Import |
Data source | Exeter Centre for Emerging Plant Diseases |
Gene counts
Coding genes | 10,847 |
Non coding genes | 87 |
Small non coding genes | 78 |
Long non coding genes | 1 |
Misc non coding genes | 8 |
Pseudogenes | 20 |
Gene transcripts | 10,954 |