Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Statistics about the gene tree nodes
| Species | # Nodes | # speciation nodes | # duplication nodes | # dubious nodes | Node types | Average duplication confidence score | Average duplication confidence score (non-dubious nodes) |
|---|---|---|---|---|---|---|---|
| Eukaryotes (Eukaryota) | 86631 | 60288 | 15099 | 11244 | 11.8 % | 20.7 % | |
| Amoebozoa | 3360 | 3100 | 203 | 57 | 33.8 % | 43.3 % | |
| Evosea | 3140 | 3034 | 100 | 6 | 35.5 % | 37.7 % | |
| Cellular slime molds (Dictyostelia) | 6918 | 6259 | 589 | 70 | 56.9 % | 63.7 % | |
| Dictyosteliales | 6324 | 6092 | 224 | 8 | 60.5 % | 62.6 % | |
| Dictyostelium | 8088 | 7351 | 737 | 0 | 76.9 % | 76.9 % | |
| Entamoeba | 18791 | 16214 | 2577 | 0 | 79.0 % | 79.0 % | |
| Discoba | 567 | 555 | 12 | 0 | 31.8 % | 31.8 % | |
| Kinetoplastids (Kinetoplastea) | 1120 | 1073 | 46 | 1 | 50.3 % | 51.4 % | |
| Trypanosomatidae | 19424 | 18430 | 858 | 136 | 43.3 % | 50.1 % | |
| Leishmaniinae | 7518 | 7374 | 140 | 4 | 58.9 % | 60.5 % | |
| Leptomonas | 7852 | 7775 | 77 | 0 | 76.6 % | 76.6 % | |
| Leishmania | 7415 | 7384 | 31 | 0 | 75.0 % | 75.0 % | |
| Leishmania | 7853 | 7719 | 130 | 4 | 69.4 % | 71.5 % | |
| Leishmania donovani species complex | 7657 | 7586 | 71 | 0 | 78.2 % | 78.2 % | |
| Trypanosoma | 25493 | 19103 | 379 | 6011 | 2.7 % | 45.7 % | |
| Trypanozoon | 7156 | 6824 | 332 | 0 | 75.9 % | 75.9 % | |
| Trypanosoma with unspecified subgenus | 1146 | 1130 | 16 | 0 | 75.0 % | 75.0 % | |
| Strigomonadinae | 4315 | 4228 | 87 | 0 | 67.2 % | 67.2 % | |
| unclassified Phytomonas | 4843 | 4809 | 34 | 0 | 70.6 % | 70.6 % | |
| Animals and Fungi (Opisthokonta) | 6884 | 6660 | 216 | 8 | 49.0 % | 50.8 % | |
| Salpingoecidae | 4801 | 4421 | 380 | 0 | 75.4 % | 75.4 % | |
| Cryptomonads (Cryptophyceae) | 212 | 206 | 0 | 6 | 0.0 % | 0.0 % | |
| Pyrenomonadales | 2 | 2 | 0 | 0 | 0.0 % | 0.0 % | |
| Sar | 21637 | 18424 | 1703 | 1510 | 14.7 % | 27.7 % | |
| Alveolates (Alveolata) | 9021 | 7955 | 634 | 432 | 19.3 % | 32.5 % | |
| Ciliates (Ciliophora) | 5657 | 4059 | 1410 | 188 | 41.2 % | 46.7 % | |
| Intramacronucleata | 4521 | 3753 | 689 | 79 | 44.8 % | 50.0 % | |
| Oxytrichidae | 53 | 41 | 12 | 0 | 66.7 % | 66.7 % | |
| Oligohymenophorea | 13567 | 11021 | 2513 | 33 | 58.9 % | 59.7 % | |
| Hymenostomatida | 4512 | 3823 | 689 | 0 | 63.1 % | 63.1 % | |
| Apicomplexans (Apicomplexa) | 3665 | 3122 | 111 | 432 | 4.2 % | 20.7 % | |
| Aconoidasida | 1728 | 1705 | 16 | 7 | 40.5 % | 58.2 % | |
| Piroplasmids (Piroplasmida) | 3188 | 3107 | 31 | 50 | 24.1 % | 62.9 % | |
| Babesia | 8904 | 8716 | 188 | 0 | 81.8 % | 81.8 % | |
| Theileria | 5891 | 5804 | 87 | 0 | 74.7 % | 74.7 % | |
| Plasmodium | 28072 | 19143 | 634 | 8295 | 1.9 % | 27.3 % | |
| Plasmodium (Plasmodium) | 24526 | 24219 | 307 | 0 | 63.7 % | 63.7 % | |
| Plasmodium (Haemamoeba) | 139 | 103 | 36 | 0 | 72.2 % | 72.2 % | |
| Plasmodium (Vinckeia) | 13386 | 13020 | 366 | 0 | 68.4 % | 68.4 % | |
| Plasmodium (Laverania) | 10087 | 9796 | 291 | 0 | 67.9 % | 67.9 % | |
| Conoidasida | 1101 | 1031 | 37 | 33 | 21.4 % | 40.4 % | |
| Eimeriorina | 5760 | 5516 | 223 | 21 | 40.2 % | 44.0 % | |
| Eimeriidae | 4337 | 4180 | 109 | 48 | 27.9 % | 40.1 % | |
| Eimeria | 21478 | 20868 | 610 | 0 | 52.0 % | 52.0 % | |
| Sarcocystidae | 19263 | 18652 | 578 | 33 | 66.5 % | 70.3 % | |
| Toxoplasma gondii | 7649 | 7538 | 111 | 0 | 74.8 % | 74.8 % | |
| Cryptosporidium | 14321 | 14134 | 187 | 0 | 79.7 % | 79.7 % | |
| Heterokonts (Stramenopiles) | 11222 | 10207 | 629 | 386 | 18.6 % | 30.1 % | |
| Oomycetes (Oomycota) | 38841 | 31233 | 4500 | 3108 | 20.9 % | 35.3 % | |
| Saprolegniaceae | 37161 | 33508 | 3621 | 32 | 67.0 % | 67.6 % | |
| Aphanomyces | 12821 | 11419 | 1402 | 0 | 80.4 % | 80.4 % | |
| Saprolegnia | 15259 | 13916 | 1343 | 0 | 79.2 % | 79.2 % | |
| Downy mildews (Peronosporaceae) | 40737 | 35643 | 3058 | 2036 | 25.0 % | 41.6 % | |
| Phytophthora | 101559 | 94052 | 7449 | 58 | 54.3 % | 54.7 % | |
| Black shank of tobacco agent (Phytophthora nicotianae) | 8543 | 8040 | 503 | 0 | 66.7 % | 66.7 % | |
| Pythiaceae | 17156 | 16515 | 581 | 60 | 41.4 % | 45.6 % | |
| Pythium | 8619 | 7861 | 758 | 0 | 71.9 % | 71.9 % | |
| Globisporangium | 21378 | 20035 | 1343 | 0 | 68.2 % | 68.2 % | |
| Bigyra | 448 | 446 | 2 | 0 | 50.0 % | 50.0 % | |
| Ochrophyta | 8480 | 8082 | 373 | 25 | 41.8 % | 44.6 % | |
| Diatoms (Bacillariophyta) | 9451 | 8121 | 1151 | 179 | 43.4 % | 50.1 % | |
| Thalassiosira | 7167 | 6523 | 644 | 0 | 76.3 % | 76.3 % | |
| Bacillariophycidae | 6874 | 6540 | 321 | 13 | 57.4 % | 59.8 % | |
| Bacillariaceae | 8357 | 7704 | 653 | 0 | 77.7 % | 77.7 % | |
| Rhizaria | 3230 | 3090 | 140 | 0 | 58.2 % | 58.2 % | |
| Metamonada | 529 | 492 | 35 | 2 | 44.8 % | 47.4 % | |
| Fornicata | 110 | 108 | 1 | 1 | 16.7 % | 33.3 % | |
| Hexamitidae | 1306 | 1209 | 97 | 0 | 73.7 % | 73.7 % |
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