Community survey for phytopathogen resources
FungiDB and Ensembl are teaming up to enhance resources for fungal and oomycete plant pathogen research - a collaboration funded by the BBSRC.
We need feedback from the phytopathogen community to help shape which genomes and functional datasets we prioritise.
Please provide your input by completing our short community survey by November 1, 2025:
https://qualtricsxmpy46tq866.qualtrics.com/jfe/form/SV_dakZl8LMNBvHpVs

In this section

Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Statistics about the gene tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Eukaryotes (Eukaryota)86631602881509911244
11.8 %20.7 %
Amoebozoa3360310020357
33.8 %43.3 %
Evosea314030341006
35.5 %37.7 %
Entamoeba187911621425770
79.0 %79.0 %
Cellular slime molds (Dictyostelia)6918625958970
56.9 %63.7 %
Dictyosteliales632460922248
60.5 %62.6 %
Dictyostelium808873517370
76.9 %76.9 %
Discoba567555120
31.8 %31.8 %
Kinetoplastids (Kinetoplastea)11201073461
50.3 %51.4 %
Trypanosomatidae1942418430858136
43.3 %50.1 %
Trypanosoma25493191033796011
2.7 %45.7 %
Trypanozoon715668243320
75.9 %75.9 %
Trypanosoma with unspecified subgenus11461130160
75.0 %75.0 %
Strigomonadinae43154228870
67.2 %67.2 %
Leishmaniinae751873741404
58.9 %60.5 %
Leptomonas78527775770
76.6 %76.6 %
Leishmania74157384310
75.0 %75.0 %
Leishmania785377191304
69.4 %71.5 %
Leishmania donovani species complex76577586710
78.2 %78.2 %
unclassified Phytomonas48434809340
70.6 %70.6 %
Cryptomonads (Cryptophyceae)21220606
0.0 %0.0 %
Pyrenomonadales2200
0.0 %0.0 %
Animals and Fungi (Opisthokonta)688466602168
49.0 %50.8 %
Salpingoecidae480144213800
75.4 %75.4 %
Sar216371842417031510
14.7 %27.7 %
Heterokonts (Stramenopiles)1122210207629386
18.6 %30.1 %
Oomycetes (Oomycota)388413123345003108
20.9 %35.3 %
Saprolegniaceae3716133508362132
67.0 %67.6 %
Aphanomyces128211141914020
80.4 %80.4 %
Saprolegnia152591391613430
79.2 %79.2 %
Downy mildews (Peronosporaceae)407373564330582036
25.0 %41.6 %
Phytophthora10155994052744958
54.3 %54.7 %
Black shank of tobacco agent (Phytophthora nicotianae)854380405030
66.7 %66.7 %
Pythiaceae171561651558160
41.4 %45.6 %
Globisporangium213782003513430
68.2 %68.2 %
Pythium861978617580
71.9 %71.9 %
Ochrophyta8480808237325
41.8 %44.6 %
Diatoms (Bacillariophyta)945181211151179
43.4 %50.1 %
Thalassiosira716765236440
76.3 %76.3 %
Bacillariophycidae6874654032113
57.4 %59.8 %
Bacillariaceae835777046530
77.7 %77.7 %
Bigyra44844620
50.0 %50.0 %
Rhizaria323030901400
58.2 %58.2 %
Alveolates (Alveolata)90217955634432
19.3 %32.5 %
Apicomplexans (Apicomplexa)36653122111432
4.2 %20.7 %
Conoidasida110110313733
21.4 %40.4 %
Eimeriorina5760551622321
40.2 %44.0 %
Cryptosporidium14321141341870
79.7 %79.7 %
Eimeriidae4337418010948
27.9 %40.1 %
Eimeria21478208686100
52.0 %52.0 %
Sarcocystidae192631865257833
66.5 %70.3 %
Toxoplasma gondii764975381110
74.8 %74.8 %
Aconoidasida17281705167
40.5 %58.2 %
Piroplasmids (Piroplasmida)318831073150
24.1 %62.9 %
Babesia890487161880
81.8 %81.8 %
Theileria58915804870
74.7 %74.7 %
Plasmodium28072191436348295
1.9 %27.3 %
Plasmodium (Laverania)1008797962910
67.9 %67.9 %
Plasmodium (Plasmodium)24526242193070
63.7 %63.7 %
Plasmodium (Haemamoeba)139103360
72.2 %72.2 %
Plasmodium (Vinckeia)13386130203660
68.4 %68.4 %
Ciliates (Ciliophora)565740591410188
41.2 %46.7 %
Intramacronucleata4521375368979
44.8 %50.0 %
Oxytrichidae5341120
66.7 %66.7 %
Oligohymenophorea1356711021251333
58.9 %59.7 %
Hymenostomatida451238236890
63.1 %63.1 %
Metamonada529492352
44.8 %47.4 %
Fornicata11010811
16.7 %33.3 %
Hexamitidae13061209970
73.7 %73.7 %