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Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Statistics about the gene tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Eukaryota86905604241535311128
11.9 %20.6 %
Sar216841844917411494
14.9 %27.7 %
Alveolata90118027577407
18.8 %32.1 %
Apicomplexa36623130106426
5.0 %25.3 %
Aconoidasida17061688144
41.5 %53.3 %
Piroplasmida319231023456
21.9 %57.8 %
Theileria590658051010
73.3 %73.3 %
Babesia893987332060
80.1 %80.1 %
Plasmodium28293191346668493
2.1 %28.4 %
Plasmodium (Laverania)1007898032750
68.5 %68.5 %
Plasmodium (Plasmodium)19189190101790
59.4 %59.4 %
Plasmodium (Vinckeia)13373130293440
69.1 %69.1 %
Plasmodium (Haemamoeba)138104340
75.0 %75.0 %
Conoidasida113810594336
22.7 %41.8 %
Eimeriorina5759553720517
40.9 %44.3 %
Sarcocystidae193291866863130
65.3 %68.4 %
Toxoplasma gondii767375551180
76.3 %76.3 %
Cryptosporidium14329141311980
77.3 %77.3 %
Eimeriidae4346418712039
29.8 %39.5 %
Eimeria21529209006290
52.9 %52.9 %
Ciliophora544339821283178
41.9 %47.7 %
Intramacronucleata4476371969760
46.3 %50.3 %
Oligohymenophorea1367511050258243
58.4 %59.4 %
Hymenostomatida449838246740
63.9 %63.9 %
Oxytrichidae5441130
65.4 %65.4 %
Rhizaria325331051480
56.1 %56.1 %
Stramenopiles1130610183696427
18.7 %30.2 %
Ochrophyta8470809035327
39.7 %42.7 %
Bacillariophyta948281361168178
43.8 %50.5 %
Thalassiosira720465316730
75.3 %75.3 %
Bacillariophycidae6886653633713
56.5 %58.7 %
Bacillariaceae836877136550
76.9 %76.9 %
Oomycota315272453242172778
21.2 %35.2 %
Saprolegniaceae3723333550365033
66.7 %67.3 %
Saprolegnia153031392713760
79.1 %79.1 %
Aphanomyces128471141414330
79.6 %79.6 %
Pythiaceae175461681266272
41.2 %45.6 %
Pythium861178617500
71.7 %71.7 %
Globisporangium215302009214380
68.2 %68.2 %
Peronosporaceae410043572532142065
24.7 %40.6 %
Phytophthora10209394379765559
54.7 %55.1 %
Phytophthora nicotianae856480605040
66.8 %66.8 %
Bigyra47447040
50.0 %50.0 %
Amoebozoa3366308322360
32.4 %41.2 %
Evosea318230701093
37.8 %38.8 %
Entamoeba188391625025890
78.9 %78.9 %
Dictyostelia6926626959958
56.6 %62.1 %
Dictyosteliales632060812345
58.9 %60.2 %
Dictyostelium812773607670
76.4 %76.4 %
Cryptophyceae21921207
0.0 %0.0 %
Pyrenomonadales3300
0.0 %0.0 %
Metamonada540498393
46.4 %50.0 %
Fornicata11010820
33.3 %33.3 %
Hexamitidae131812161020
71.6 %71.6 %
Opisthokonta6898667621210
47.6 %49.9 %
Salpingoecidae482344243990
75.4 %75.4 %
Discoba565553111
31.0 %33.8 %
Kinetoplastea11261071532
50.3 %52.2 %
Trypanosomatidae1940518421841143
44.0 %51.4 %
Strigomonadinae42884218700
66.4 %66.4 %
Trypanosoma25042187083815953
2.8 %46.3 %
Trypanosoma with unspecified subgenus11921174180
66.7 %66.7 %
unclassified Phytomonas48704822480
67.7 %67.7 %
Leishmaniinae750873721342
61.3 %62.2 %
Leptomonas78497768810
77.2 %77.2 %
Leishmania74267383421
71.3 %73.0 %
Leishmania785477251263
71.6 %73.3 %
Leishmania donovani species complex76707595750
78.0 %78.0 %