Community survey for phytopathogen resources
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Please provide your input by completing our short community survey by November 1, 2025:
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In this section

Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Eukaryota, Fornicata, Alveolata, Amoebozoa, Stramenopiles, Rhizaria

Favourite species

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Plasmodium falciparum - GCA_000002765.3 (Plasmodium falciparum 3D7)531853071145303
237000
Dictyostelium discoideum (Dictyostelium discoideum AX4)13209113641845117310191
2660000
Phytophthora infestans (Phytophthora infestans T30-4)177851686691951116355
2872000
Leishmania major (Leishmania major strain Friedlin)831582803578273
448000

Eukaryota

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Sphaeroforma arctica JP610 (GCA_001186125.1) (Sphaeroforma arctica JP610)182138683953027275956
2677000
Naegleria gruberi str. NEG-M (GCA_000004985.1) (Naegleria gruberi)1570911262444739967266
5052000
Strigomonas culicis (GCA_000442495.1) (Strigomonas culicis)1208310374170924710127
5115000
Trypanosoma equiperdum (GCA_001457755.2) (Trypanosoma equiperdum)766873902782237167
324000
Guillardia theta CCMP2712 (Guillardia theta CCMP2712)24945153039642504410259
5985000
Trypanosoma conorhini (GCA_003719485.1) (Trypanosoma conorhini)1014892469026448602
1006000
Trypanosoma rangeli SC58 (GCA_000492115.1) (Trypanosoma rangeli SC58)7475695152496942
639000
Tritrichomonas foetus str. K (GCA_001839685.1) (Tritrichomonas foetus)25030188516179861210239
12936000
Chroomonas mesostigmatica CCMP1168 (GCA_000286095.1) (Chroomonas mesostigmatica CCMP1168)50534316244299
60000
Leptomonas seymouri str. ATCC 30220 (GCA_001299535.1) (Leptomonas seymouri)84858114371138101
41000
Monosiga brevicollis MX1 (GCA_000002865.1) (Monosiga brevicollis MX1)9172724419284206824
935000
Perkinsela sp. CCAP 1560/4 (GCA_001235845.1) (Perkinsela sp. CCAP 1560/4)52523628162418021826
1723000
Trypanosoma brucei (Trypanosoma brucei)874781076401297978
663000
Trypanosoma theileri (GCA_002087225.1) (Trypanosoma theileri)113121046684618878579
2306000
Thecamonas trahens ATCC 50062 (GCA_000142905.1) (Thecamonas trahens ATCC 50062)10543703835056896349
1213000
Trypanosoma cruzi marinkellei (GCA_000300495.1) (Trypanosoma cruzi marinkellei)10104973037420477683
2768000
Cryptomonas paramecium str. CCAP977/2A (GCA_000194455.1) (Cryptomonas paramecium)4662582080258
6000
Salpingoeca rosetta str. ATCC 50818 (GCA_000188695.1) (Salpingoeca rosetta)116248581304311847397
1775000
Leishmania major (Leishmania major strain Friedlin)831582803578273
448000
Angomonas deanei (GCA_000442575.2) (Angomonas deanei)16888149011987120413697
8161000
Phytomonas sp. isolate Hart1 (GCA_000982615.1) (Phytomonas sp. Hart1)64515642809445598
194000
Leptomonas pyrrhocoris str. H10 (GCA_001293395.1) (Leptomonas pyrrhocoris)987294114612369175
1005000
Leishmania infantum (GCA_900500625.1) (Leishmania infantum)85268389137488341
367000
Fonticula alba str. ATCC 38817 (GCA_000388065.2) (Fonticula alba)5901340324982313172
401000
Emiliania huxleyi (Emiliania huxleyi CCMP1516)385443272758171597416753
18781000
Leishmania donovani str. BPK282A1 (GCA_000227135.2) (Leishmania donovani)80327812220187794
77000
Leishmania panamensis str. MHOM/PA/94/PSC-1 (GCA_000755165.1) (Leishmania panamensis)771176496207649
120000
Capsaspora owczarzaki ATCC 30864 (GCA_000151315.2) (Capsaspora owczarzaki ATCC 30864)8758665321056066047
1057000
Phytomonas sp. isolate EM1 (GCA_000582765.1) (Phytomonas sp. EM1)63815732649115721
97000

Fornicata

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Kipferlia bialata (GCA_003568945.1) (Kipferlia bialata)362211242498785339
586000
Giardia intestinalis - GCA_000002435.2 (Giardia intestinalis strain WB C6)4962306518972582807
869000
Spironucleus salmonicida - GCA_000497125.2 (Spironucleus salmonicida strain ATCC 50377)86674704396324302274
2245000

Alveolata

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Plasmodium coatneyi (GCA_001680005.1) (Plasmodium coatneyi)55165455613545101
608000
Besnoitia besnoiti str. Bb-Ger1 (GCA_002563875.1) (Besnoitia besnoiti)822475736513397234
772000
Plasmodium vivax - GCA_900093555.2 (Plasmodium vivax strain Salvador I)5389529891355263
231000
Theileria orientalis strain Shintoku (GCA_000740895.1) (Theileria orientalis strain Shintoku)400235584441733385
254000
Pseudocohnilembus persalinus (GCA_001447515.1) (Pseudocohnilembus persalinus)13179816750129517216
1446000
Plasmodium vinckei petteri str. CR (GCA_000524515.1) (Plasmodium vinckei petteri)5160506199585003
218000
Theileria parva str. Muguga (GCA_000165365.1) (Theileria parva)407936024772813321
354000
Hammondia hammondi str. H.H.34 (GCA_000258005.2) (Hammondia hammondi)8003754745687539
44000
Plasmodium sp. DRC-Itaito (GCA_900240055.1) (Plasmodium sp. DRC-Itaito PGABG02)9455391045
16000
Tetrahymena thermophila (Tetrahymena thermophila SB210)24725174557270416813287
7167000
Stentor coeruleus (GCA_001970955.1) (Stentor coeruleus)314262816032661334414816
19393000
Eimeria acervulina (GCA_000499425.1) (Eimeria acervulina)686758431024505793
113000
Cystoisospora suis str. Wien I (GCA_002600585.1) (Cystoisospora suis)11543658749563816206
585000
Plasmodium sp. gorilla clade G2 (GCA_900097015.1) (Plasmodium sp. gorilla clade G2)344333113330
77000
Plasmodium fragile str. multiple (GCA_000956335.1) (Plasmodium fragile)567254841885284956
591000
Plasmodium chabaudi (Plasmodium chabaudi chabaudi strain AS)515751525655087
240000
Plasmodium berghei - GCA_900002375.2 (Plasmodium berghei ANKA)49454940504940
153000
Babesia bigemina str. Bond (GCA_000981445.1) (Babesia bigemina)507947063736324074
1018000
Plasmodium reichenowi (GCA_001601855.1) (Plasmodium reichenowi ASM160185v1)5040491112964905
23000
Paramecium tetraurelia (Paramecium tetraurelia)396423440252401415020252
22132000
Toxoplasma gondii - GCA_000006565.2 (Toxoplasma gondii ME49)8138799414407994
60000
Cryptosporidium parvum Iowa II (GCA_000165345.1) (Cryptosporidium parvum Iowa II)380537089703708
13000
Cryptosporidium ubiquitum (GCA_001865345.1) (Cryptosporidium ubiquitum)376637036303703
6000
Cryptosporidium muris RN66 (GCA_000006515.1) (Cryptosporidium muris RN66)393438944023892
16000
Plasmodium ovale curtisi (GCA_900088565.1) (Plasmodium ovale curtisi Poc2)86257505112016955810
2279000
Theileria equi strain WA (GCA_000342415.1) (Theileria equi strain WA)5329485247712583594
1434000
Plasmodium gonderi (GCA_002157705.1) (Plasmodium gonderi)59165830867245106
775000
Toxoplasma gondii VEG (GCA_000150015.2) (Toxoplasma gondii VEG)8410803937188031
108000
Plasmodium malariae (GCA_900088575.1) (Plasmodium malariae Pmal)6343564070310444596
1061000
Plasmodium falciparum - GCA_000002765.3 (Plasmodium falciparum 3D7)531853071145303
237000
Cryptosporidium meleagridis str. UKMEL1 (GCA_001593445.1) (Cryptosporidium meleagridis)375337213203721
3000
Eimeria mitis - GCA_000499745.2 (Eimeria mitis strain Houghton)10076584742293315516
901000
Plasmodium relictum (GCA_900005765.1) (Plasmodium relictum)3453311472259
204000
Babesia sp. Xinjiang (GCA_002095265.1) (Babesia sp. Xinjiang)30662946120552891
326000
Plasmodium inui San Antonio 1 (GCA_000524495.1) (Plasmodium inui San Antonio 1)583253195134144905
423000
Gregarina niphandrodes (GCA_000223845.4) (Gregarina niphandrodes)63753620275514282192
1387000
Eimeria maxima str. Weybridge (GCA_000499605.1) (Eimeria maxima)60575175882635112
182000
Plasmodium gallinaceum (GCA_900005855.1) (Plasmodium gallinaceum)524651031432784825
360000
Eimeria tenella str. Houghton (GCA_000499545.1) (Eimeria tenella)8599624323561766067
396000
Plasmodium cynomolgi strain B (GCA_000321355.1) (Plasmodium cynomolgi strain B)571654542622255229
401000
Eimeria brunetti (GCA_000499725.1) (Eimeria brunetti)871158022909705732
406000
Plasmodium gaboni (GCA_001602025.1) (Plasmodium gaboni)51985091107215070
99000
Perkinsus marinus ATCC 50983 str. PmCV4CB5 2B3 D4 (GCA_000006405.1) (Perkinsus marinus ATCC 50983)2347418800467488559945
11598000
Eimeria praecox (GCA_000499445.1) (Eimeria praecox)763542513384294222
138000
Plasmodium yoelii yoelii str. 17XNL (GCA_000003085.2) (Plasmodium yoelii yoelii)7861582020419194901
1279000
Cryptosporidium andersoni (GCA_001865355.1) (Cryptosporidium andersoni)387638443203844
2000
Symbiodinium microadriaticum str. CCMP2467 (GCA_001939145.1) (Symbiodinium microadriaticum)4340328367150361674911618
17324000
Babesia bovis T2Bo - GCA_000165395.2 (Babesia bovis T2Bo)395538071483153492
378000
Oxytricha trifallax str. JRB310 (GCA_000711775.1) (Oxytricha trifallax Oxytricha_MIC_v2.0)810463347352111
347000
Stylonychia lemnae str. 130c (GCA_000751175.1) (Stylonychia lemnae)2074013517722347718746
6459000
Ichthyophthirius multifiliis str. G5 (GCA_000220395.1) (Ichthyophthirius multifiliis)8056632817281556173
1234000
Babesia ovata str. Miyake (GCA_002897235.1) (Babesia ovata)503145065258933613
1163000
Plasmodium knowlesi - GCA_000006355.3 (Plasmodium knowlesi strain H)53285308202325076
333000
Cyclospora cayetanensis str. CHN_HEN01 (GCA_000769155.2) (Cyclospora cayetanensis)715349152238764839
96000

Amoebozoa

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Acanthamoeba castellanii - GCA_000313135.1 (Acanthamoeba castellanii str. Neff)1493510829410624578372
3318000
Entamoeba invadens IP1 (GCA_000330505.1) (Entamoeba invadens IP1)99258659126614777182
3500000
Cavenderia fasciculata str. SH3 (GCA_000203815.1) (Cavenderia fasciculata)121659808235719547854
2648000
Planoprotostelium fungivorum str. Jena (GCA_003024175.1) (Planoprotostelium fungivorum)1712412552457241248428
5331000
Dictyostelium discoideum (Dictyostelium discoideum AX4)13209113641845117310191
2660000
Entamoeba histolytica (Entamoeba histolytica HM-1:IMSS)81137978135707908
1015000
Tieghemostelium lacteum str. TK (GCA_001606155.1) (Tieghemostelium lacteum)102258996122913047692
1722000
Dictyostelium purpureum str. QSDP1 (GCA_000190715.1) (Dictyostelium purpureum)1239911015138411899826
2534000
Entamoeba nuttalli P19 (GCA_000257125.1) (Entamoeba nuttalli P19)61875955232135942
41000
Entamoeba dispar SAW760 (GCA_000209125.2) (Entamoeba dispar SAW760)881184453662288217
1612000

Stramenopiles

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Nothophytophthora sp. Chile5 (GCA_001712635.2) (Nothophytophthora sp. Chile5)2712226128994105925069
12069000
Phytophthora lateralis (Phytophthora lateralis MPF4)116351018814472099979
640000
Aphanomyces invadans - GCA_000520115.1 (Aphanomyces invadans strain NJM9701)1524813827142129513532
1040000
Phytophthora cactorum str. 10300 (GCA_003287315.1) (Phytophthora cactorum)23869215782291119920379
3558000
Thraustotheca clavata str. ATCC 34112 (GCA_002081575.1) (Thraustotheca clavata)131741234982516212187
1092000
Saprolegnia parasitica CBS 223.65 (GCA_000151545.2) (Saprolegnia parasitica CBS 223.65)2012118699142225918440
3023000
Phytophthora sojae (Phytophthora sojae strain P6497)26489249541535196922985
7167000
Aureococcus anophagefferens (GCA_000186865.1) (Aureococcus anophagefferens)115209214230612537961
2525000
Ectocarpus siliculosus str. Ec 32 (CCAP 1310/04) (GCA_000310025.1) (Ectocarpus siliculosus)1626911069520022248845
2874000
Thalassiosira pseudonana (Thalassiosira pseudonana CCMP1335)1167210503116942410079
1162000
Aphanomyces astaci - GCA_000520075.1 (Aphanomyces astaci strain strain APO3)19119169642155136215602
3378000
Phytophthora kernoviae (Phytophthora kernoviae 00238/432)10650855920911108449
305000
Phytophthora parasitica (Phytophthora nicotianae P1569)2315919716344357719139
2052000
Pythium irregulare (Globisporangium irregulare DAOM BR486)138041314665810613040
843000
Peronospora effusa (GCA_003704535.1) (Peronospora effusa Peff_R14)856978437262507593
436000
Fragilariopsis cylindrus CCMP1102 (GCA_001750085.1) (Fragilariopsis cylindrus CCMP1102)18082148023280225112551
3276000
Pythium vexans (Phytopythium vexans DAOM BR484)119571133062715711173
998000
Phytophthora nicotianae (GCA_001482985.1) (Phytophthora nicotianae ASM148298v1)1052110285236410281
571000
Achlya hypogyna str. ATCC 48635 (GCA_002081595.1) (Achlya hypogyna)14406140203867513945
718000
Pythium iwayamai (Globisporangium iwayamae DAOM BR242034)1524813878137031013568
1689000
Phytophthora palmivora var. palmivora str. sbr112.9 (GCA_002911725.1) (Phytophthora palmivora)24674228581816188520973
8574000
Phytophthora megakarya str. zdho120 (GCA_002215365.1) (Phytophthora megakarya)34804320882716475727331
13424000
Pythium arrhenomanes (Pythium arrhenomanes ATCC 12531)1380512597120828312314
1521000
Hondaea fermentalgiana (GCA_002897355.1) (Hondaea fermentalgiana)118538462339113007162
1871000
Albugo laibachii (Albugo laibachii Nc14)1380411495230921299366
3978000
Thalassiosira oceanica str. CCMP1005 (GCA_000296195.2) (Thalassiosira oceanica)345002502694741254712479
12636000
Pythium ultimum (Globisporangium ultimum DAOM BR144 pug)1529014083120720713876
1812000
Nannochloropsis gaditana CCMP526 (GCA_000240725.1) (Nannochloropsis gaditana CCMP526)3554229512593391956
433000
Pseudo-nitzschia multistriata (Pseudo-nitzschia multistriata)11895999918961919808
642000
Saprolegnia diclina VS20 (GCA_000281045.1) (Saprolegnia diclina VS20)173591677858118616592
1015000
Plasmopara halstedii (GCA_900000015.1) (Plasmopara halstedii)154691066248078329830
1194000
Pythium aphanidermatum (Pythium aphanidermatum DAOM BR444)12305115787277011508
851000
Hyaloperonospora arabidopsidis (Hyaloperonospora arabidopsidis Emoy2)1432110943337819478996
2626000
Blastocystis hominis str. Singapore isolate B (sub-type 7) (GCA_000151665.1) (Blastocystis hominis)6020414918717133436
1419000
Phaeodactylum tricornutum (Phaeodactylum tricornutum CCAP 1055/1)121781031818607919527
1599000
Phytophthora infestans (Phytophthora infestans T30-4)177851686691951116355
2872000
Phytophthora ramorum (Phytophthora ramorum)156051541818717715241
2767000

Rhizaria

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Bigelowiella natans (Bigelowiella natans CCMP2755)2170612365934125509815
3375000
Reticulomyxa filosa (GCA_000512085.1) (Reticulomyxa filosa)399632786712096183899478
18387000
Plasmodiophora brassicae (GCA_001049375.1) (Plasmodiophora brassicae)97276865286210775788
1534000