Ensembl Tools
We provide a number of ready-made tools for processing both our data and yours. We routinely delete results from our servers after 10 days, but if you have an ensembl account you will be able to save the results indefinitely.
Processing your data
Name | Description | Online tool | Upload limit | Download script | Documentation |
---|---|---|---|---|---|
Variant Effect Predictor | Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool. | 50MB* | |||
HMMER | Quickly search our genomes for your protein sequence. | ||||
BLAST/BLAT | Search our genomes for your DNA or protein sequence. | 50MB | |||
Assembly Converter | Map (liftover) your data's coordinates to the current assembly. | 50MB |
Accessing Ensembl Protists data
Name | Description | Get it from: | Documentation |
---|---|---|---|
Ensembl Perl API | Programmatic access to all Ensembl data using simple Perl scripts | GitHub or FTP download (current release only) | |
Ensembl Genomes REST server | Access Ensembl data using your favourite programming language |