FTP Download

You can download via a browser from our FTP site, use a script, or even use rsync from the command line.

Globus

For rapid bulk download of files, the Ensembl FTP site is available as an end point in the Globus Online system. In order to access the data you need to sign up for an account with Globus, install the Globus Connect Personal software and setup a personal endpoint to download the data. The Ensembl data is hosted at the EMBL-EBI end point called "EMBL-EBI Public Data". Data from the Ensembl FTP site can then be found under the "/ensemblorg/pub". You can also click here to open the target directory.

API Code

If you do not have access to git, you can obtain our latest API code as a gzipped tarball:

Download complete API for this release

Note: the API version needs to be the same as the databases you are accessing, so please use git to obtain a previous version if querying older databases.

Database dumps

Entire databases can be downloaded from our FTP site in a variety of formats. Please be aware that some of these files can run to many gigabytes of data.

Looking for MySQL dumps to install databases locally? See our web installation instructions for full details.

Each directory on https://ftp.ebi.ac.uk/ensemblgenomes contains a README file, explaining the directory structure.

Multi-species data

Database	MySQL	TSV	EMF	MAF	XML
Pan_compara Multi-species	MySQL	TSV	EMF		XML
Protists Multi-species	MySQL	TSV	EMF	MAF	XML
Ensembl Mart	MySQL

Single species data

Popular species are listed first. You can customise this list via our home page.

	Species	DNA (FASTA)	cDNA (FASTA)	CDS (FASTA)	ncRNA (FASTA)	Protein sequence (FASTA)	Annotated sequence (EMBL)	Annotated sequence (GenBank)	Gene sets	Other annotations	Whole databases	Variation (GVF)	Variation (VCF)	Variation (VEP)
Y	Plasmodium falciparum 3D7	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
Y	Dictyostelium discoideum	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
Y	Phytophthora infestans	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	VEP
Y	Leishmania major	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Acanthamoeba castellanii str. Neff (GCA_000313135.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Achlya hypogyna str. ATCC 48635 (GCA_002081595.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Albugo laibachii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Angomonas deanei (GCA_000442575.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_002197585.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546545.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546565.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546585.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546605.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546625.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546765.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546785.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546805.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003546825.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci (GCA_003666305.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces astaci str. APO3 (GCA_000520075.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces invadans (GCA_003546525.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aphanomyces invadans str. NJM9701 (GCA_000520115.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Aureococcus anophagefferens (GCA_000186865.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Babesia bigemina str. Bond (GCA_000981445.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Babesia bovis str. T2Bo (GCA_000165395.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Babesia ovata str. Miyake (GCA_002897235.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Babesia sp. Xinjiang (GCA_002095265.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Besnoitia besnoiti str. Bb-Ger1 (GCA_002563875.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Bigelowiella natans	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Blastocystis hominis str. Singapore isolate B (sub-type 7) (GCA_000151665.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Capsaspora owczarzaki ATCC 30864 (GCA_000151315.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cavenderia fasciculata str. SH3 (GCA_000203815.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Chroomonas mesostigmatica CCMP1168 (GCA_000286095.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cryptomonas paramecium str. CCAP977/2A (GCA_000194455.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cryptosporidium andersoni (GCA_001865355.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cryptosporidium meleagridis str. UKMEL1 (GCA_001593445.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cryptosporidium muris RN66 (GCA_000006515.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cryptosporidium parvum Iowa II (GCA_000165345.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cryptosporidium ubiquitum (GCA_001865345.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cyclospora cayetanensis str. CHN_HEN01 (GCA_000769155.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Cystoisospora suis str. Wien I (GCA_002600585.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Dictyostelium purpureum str. QSDP1 (GCA_000190715.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Ectocarpus siliculosus str. Ec 32 (CCAP 1310/04) (GCA_000310025.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Eimeria acervulina (GCA_000499425.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Eimeria brunetti (GCA_000499725.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Eimeria maxima str. Weybridge (GCA_000499605.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Eimeria mitis (GCA_000499745.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Eimeria praecox (GCA_000499445.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Eimeria tenella str. Houghton (GCA_000499545.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Emiliania huxleyi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba dispar SAW760 (GCA_000209125.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba histolytica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba histolytica HM-1:IMSS-A (GCA_000365475.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba histolytica HM-1:IMSS-B str. HM3:IMSS-B (GCA_000344925.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba histolytica HM-3:IMSS (GCA_000346345.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba histolytica KU27 (GCA_000338855.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba histolytica str. HM1:IMSS clone 6 (GCA_001662325.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba invadens IP1 (GCA_000330505.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Entamoeba nuttalli P19 (GCA_000257125.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Fonticula alba str. ATCC 38817 (GCA_000388065.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Fragilariopsis cylindrus CCMP1102 (GCA_001750085.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Giardia intestinalis ATCC 50581 str. GS/M H7 (GCA_000182405.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Giardia intestinalis assemblage B str. BAH15c1 (GCA_001543975.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Giardia intestinalis str. DH (GCA_000498715.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Giardia intestinalis str. GS (GCA_000498735.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Giardia lamblia	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Giardia lamblia P15 (GCA_000182665.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Gregarina niphandrodes (GCA_000223845.4)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Guillardia theta CCMP2712	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Hammondia hammondi str. H.H.34 (GCA_000258005.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Hondaea fermentalgiana (GCA_002897355.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Hyaloperonospora arabidopsidis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Ichthyophthirius multifiliis str. G5 (GCA_000220395.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Kipferlia bialata (GCA_003568945.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Leishmania donovani str. BPK282A1 (GCA_000227135.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Leishmania infantum (GCA_900500625.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Leishmania panamensis str. MHOM/PA/94/PSC-1 (GCA_000755165.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Leptomonas pyrrhocoris str. H10 (GCA_001293395.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Leptomonas seymouri str. ATCC 30220 (GCA_001299535.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Monosiga brevicollis MX1 (GCA_000002865.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Naegleria gruberi str. NEG-M (GCA_000004985.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Nannochloropsis gaditana CCMP526 (GCA_000240725.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Nannochloropsis gaditana str. B-31 (GCA_000569095.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Nothophytophthora sp. Chile5 (GCA_001712635.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Oxytricha trifallax str. JRB310 (GCA_000295675.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Oxytricha trifallax str. JRB310 (GCA_000711775.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Paramecium tetraurelia	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Perkinsela sp. CCAP 1560/4 (GCA_001235845.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Perkinsus marinus ATCC 50983 str. PmCV4CB5 2B3 D4 (GCA_000006405.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Peronospora effusa (GCA_003704535.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Peronospora effusa (GCA_003843895.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phaeodactylum tricornutum	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	VEP
	Phytomonas sp. isolate EM1 (GCA_000582765.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytomonas sp. isolate Hart1 (GCA_000982615.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora cactorum str. 10300 (GCA_003287315.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora kernoviae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora kernoviae (GCA_001707905.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora kernoviae (GCA_001712645.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora kernoviae (GCA_001712705.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora kernoviae (GCA_001712715.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora lateralis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora megakarya str. zdho120 (GCA_002215365.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora nicotianae (GCA_001482985.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora nicotianae (GCA_001483015.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora palmivora var. palmivora str. sbr112.9 (GCA_002911725.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica CJ01A1 (GCA_000365545.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica INRA-310 (GCA_000247585.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica P10297 (GCA_000367145.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica P1976 (GCA_000365525.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica str. CHvinca01 (GCA_000509505.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica str. CJ02B3 (GCA_000509465.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica str. CJ05E6 (GCA_000509485.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora parasitica str. IAC_01/95 (GCA_000509525.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora ramorum	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Phytophthora sojae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Planoprotostelium fungivorum str. Jena (GCA_003024175.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodiophora brassicae (GCA_001049375.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium berghei	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium berghei (GCA_900044335.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium berghei (GCA_900088445.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium berghei (GCA_900095585.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium berghei (GCA_900095635.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium chabaudi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium chabaudi adami (GCA_900095565.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium chabaudi chabaudi (GCA_900095605.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium coatneyi (GCA_001680005.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium cynomolgi strain B (GCA_000321355.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum 7G8 (GCA_000150435.3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum CAMP/Malaysia (GCA_000521115.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum Dd2 (GCA_000149795.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum FCH/4 (GCA_000521155.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum HB3 (GCA_000149665.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum IGH-CR14 (GCA_000186055.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum MaliPS096_E11 (GCA_000521035.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum NF135/5.C10 (GCA_000521075.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum NF54 (GCA_000401695.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum NF54 (GCA_002831795.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum Palo Alto/Uganda (GCA_000521095.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum RAJ116 (GCA_000186025.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum Santa Lucia (GCA_000150455.3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum Tanzania (2000708) (GCA_000521055.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum UGT5.1 (GCA_000401715.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium falciparum Vietnam Oak-Knoll (FVO) (GCA_000521015.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium fragile str. multiple (GCA_000956335.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium gaboni (GCA_001602025.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium gallinaceum (GCA_900005855.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium gonderi (GCA_002157705.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium inui San Antonio 1 (GCA_000524495.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium knowlesi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium knowlesi str. Malayan Strain Pk1 (A+) (GCA_002140095.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium knowlesi strain H (GCA_900004885.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium malariae (GCA_900088575.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium malariae (GCA_900090045.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium ovale (GCA_900090025.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium ovale curtisi (GCA_900088555.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium ovale curtisi (GCA_900088565.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium ovale wallikeri (GCA_900088485.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium ovale wallikeri (GCA_900088545.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium reichenowi (GCA_001601855.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium reichenowi (GCA_900097025.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium relictum (GCA_900005765.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium sp. DRC-Itaito (GCA_900240055.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium sp. DRC-Itaito (GCA_900257145.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium sp. gorilla clade G2 (GCA_900097015.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vinckei petteri str. CR (GCA_000524515.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vinckei vinckei (GCA_000709005.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vivax	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vivax (GCA_900093555.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vivax Brazil I (GCA_000320645.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vivax India VII (GCA_000320625.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vivax Mauritania I (GCA_000320665.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium vivax North Korean (GCA_000320685.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium yoelii 17X (GCA_000505035.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium yoelii str. 17X (GCA_900002385.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium yoelii str. YM (GCA_900002395.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmodium yoelii yoelii str. 17XNL (GCA_000003085.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Plasmopara halstedii (GCA_900000015.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pseudo-nitzschia multistriata	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pseudocohnilembus persalinus (GCA_001447515.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pythium aphanidermatum	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pythium arrhenomanes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pythium irregulare	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pythium iwayamai	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pythium ultimum	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Pythium vexans	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Reticulomyxa filosa (GCA_000512085.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Salpingoeca rosetta str. ATCC 50818 (GCA_000188695.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Saprolegnia diclina VS20 (GCA_000281045.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Saprolegnia parasitica CBS 223.65 (GCA_000151545.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Sphaeroforma arctica JP610 (GCA_001186125.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Spironucleus salmonicida (GCA_000497125.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Stentor coeruleus (GCA_001970955.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Strigomonas culicis (GCA_000442495.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Stylonychia lemnae str. 130c (GCA_000751175.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Symbiodinium microadriaticum str. CCMP2467 (GCA_001939145.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Tetrahymena thermophila	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Thalassiosira oceanica str. CCMP1005 (GCA_000296195.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Thalassiosira pseudonana	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Thecamonas trahens ATCC 50062 (GCA_000142905.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Theileria equi strain WA (GCA_000342415.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Theileria orientalis str. Fish Creek (GCA_003072545.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Theileria orientalis str. Goon Nure (GCA_003072535.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Theileria orientalis str. Robertson (GCA_003072525.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Theileria orientalis strain Shintoku (GCA_000740895.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Theileria parva str. Muguga (GCA_000165365.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Thraustotheca clavata str. ATCC 34112 (GCA_002081575.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Tieghemostelium lacteum str. TK (GCA_001606155.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii ARI (GCA_000250965.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii CAST (GCA_000256705.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii COUG (GCA_000338675.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii FOU (GCA_000224905.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii GAB2-2007-GAL-DOM2 (GCA_000325525.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii GT1 (GCA_000149715.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii MAS (GCA_000224865.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii ME49	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii RUB (GCA_000224805.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii TgCATBr9 (GCA_000224825.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii TgCatPRC2 (GCA_000256725.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii VAND (GCA_000224845.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii VEG (GCA_000150015.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Toxoplasma gondii p89 (GCA_000224885.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Tritrichomonas foetus str. K (GCA_001839685.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma brucei	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma brucei equiperdum str. IVM-t1 (GCA_003543875.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma conorhini (GCA_003719485.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi (GCA_003719155.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi (GCA_003719455.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi Dm28c (GCA_000496795.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi marinkellei (GCA_000300495.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi str. CL Brener (GCA_000209065.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi str. Dm28c (GCA_003177105.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma cruzi str. TCC (GCA_003177095.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma equiperdum (GCA_001457755.2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma rangeli (GCA_003719475.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma rangeli SC58 (GCA_000492115.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP
	Trypanosoma theileri (GCA_002087225.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	VEP

Metadata

Data files containing metadata for Ensembl Genomes from release 15 onwards can be found in the root directory or appropriate division directory of each release e.g. https://ftp.ebi.ac.uk/ensemblgenomes/pub/current/protists/.

The following files are provided:

species.txt (or e.g. species_EnsemblProtists.txt) - simple tab-separated file containing basic information about each genome
species_metadata.json (or e.g. species_metadata_EnsemblProtists.json) - full metadata about each genome in JSON format, including comparative analyses, sequence region names etc.
species_metadata.xml (or e.g. species_metadata_EnsemblProtists.xml) - full metadata about each genome in XML format, including comparative analyses, sequence region names etc.
uniprot_report.txt (or e.g. uniprot_report_EnsemblProtists.txt) - specialised tab-separated file containing information about mapping of genome to UniProtKB

To facilitate storage and download all databases are GNU Zip (gzip, *.gz) compressed.

About the data

The following types of data dumps are available on the FTP site.

FASTA

FASTA sequence databases of Ensembl gene, transcript and protein model predictions. Since the FASTA format does not permit sequence annotation, these database files are mainly intended for use with local sequence similarity search algorithms. Each directory has a README file with a detailed description of the header line format and the file naming conventions.

DNA: Masked and unmasked genome sequences associated with the assembly (contigs, chromosomes etc.).; The header line in an FASTA dump files containing DNA sequence consists of the following attributes : coord_system:version:name:start:end:strand This coordinate-system string is used in the Ensembl API to retrieve slices with the SliceAdaptor.
CDS: Coding sequences for Ensembl or ab initio predicted genes.
cDNA: cDNA sequences for Ensembl or ab initio predicted genes.
Peptides: Protein sequences for Ensembl or ab initio predicted genes.
RNA: Non-coding RNA gene predictions.

Annotated sequence

Flat files allow more extensive sequence annotation by means of feature tables and contain thus the genome sequence as annotated by the automated Ensembl genome annotation pipeline. Each nucleotide sequence record in a flat file represents a 1Mb slice of the genome sequence. Flat files are broken into chunks of 1000 sequence records for easier downloading.

EMBL: Ensembl database dumps in EMBL nucleotide sequence database format
GenBank: Ensembl database dumps in GenBank nucleotide sequence database format

MySQL

All Ensembl MySQL databases are available in text format as are the SQL table definition files. These can be imported into any SQL database for a local installation of a mirror site. Generally, the FTP directory tree contains one directory per database. For more information about these databases and their Application Programming Interfaces (or APIs) see the API section.

GTF

Gene sets for each species. These files include annotations of both coding and non-coding genes. This file format is described here.

GFF3

GFF3 provides access to all annotated transcripts which make up an Ensembl gene set. This file format is described here.

JSON

Genome and annotation data in JSON format for each species. This file format is described here.

EMF flatfile dumps (comparative data)

Alignments of resequencing data are available for several species as Ensembl Multi Format (EMF) flatfile dumps. The accompanying README file describes the file format.

Also, the same format is used to dump whole-genome multiple alignments as well as gene-based multiple alignments and phylogentic trees used to infer Ensembl orthologues and paralogues. These files are available in the ensembl_compara database which will be found in the mysql directory.

MAF (comparative data)

MAF files are provided for all pairwise alignments containing human (GRCh38), and all multiple alignments. The MAF file format is described here.

GVF (variation data)

GVF (Genome Variation Format) is a simple tab-delimited format derived from GFF3 for variation positions across the genome. There are GVF files for different types of variation data (e.g. somatic variants, structural variants etc). For more information see the "README" files in the GVF directory.

VCF (variation data)

VCF (Variant Call Format) is a text file format containing meta-information lines, a header line, and then data lines each containing information about a position in the genome. This file format can also contain genotype information on samples for each position. More details about the format and its specifications are available here.

VEP (variation data)

Compressed text files (called "cache files") used by the Variant Effect Predictor tool. More information about these files is available here.

BED format files (comparative data)

Constrained elements calculated using GERP are available in BED format. For more information see the accompanying README file.

BED format is a simple line-based format. The first 3 mandatory columns are:

chromosome name (may start with 'chr' for compliance with UCSC)
start position. This is a 0-based position
end position.

More information on the BED file format...

Tarball

The entire Ensembl API is gzipped and concatenated into a single TAR file. This is updated daily.

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