Emiliania huxleyi vs Phytophthora infestans Translated Blat results
Emiliania huxleyi (Emiliania huxleyi CCMP1516, Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0) and Phytophthora infestans (Phytophthora infestans T30-4, ASM14294v1) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl Protists release 74. Emiliania huxleyi was used as the reference species. After running Translated Blat, the raw Translated Blat alignment blocks were chained according to their location in both genomes. During the final netting process, the best sub-chain was chosen in each region on the reference species.
Configuration parameters
Parameter | Value |
---|---|
Minimum score (minScore) | 30 |
Database type (t) | dnax |
Query type (q) | dnax |
Mask out repeats (mask) | lower |
Mask out repeats on query (qMask) | lower |
Chunking parameters
Parameter | Emiliania huxleyi | Phytophthora infestans |
---|---|---|
Chunk size | 1,000,000 | 1,000,000 |
Overlap | 10,000 | 10,000 |
Group set size | 100,000,000 | 100,000,000 |
Masking options | {default_soft_masking => 1} | {default_soft_masking => 1} |
Statistics over 14,628 alignment blocks
Genome coverage (bp) | Coding exon coverage (bp) | |
---|---|---|
Emiliania huxleyi |
Uncovered: 166,089,703 out of 167,675,649 |
Uncovered: 38,320,512 out of 39,740,234 |
Phytophthora infestans |
Uncovered: 227,656,755 out of 228,543,505 |
Uncovered: 21,575,048 out of 22,421,425 |