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Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Chroomonas mesostigmatica CCMP1168 (GCA_000286095.1) (Chroomonas mesostigmatica CCMP1168)
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Guillardia theta CCMP2712 (Guillardia theta CCMP2712)
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Cryptomonas paramecium str. CCAP977/2A (GCA_000194455.1) (Cryptomonas paramecium)
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Strigomonas culicis (GCA_000442495.1) (Strigomonas culicis)
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Angomonas deanei (GCA_000442575.2) (Angomonas deanei)
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Phytomonas sp. isolate EM1 (GCA_000582765.1) (Phytomonas sp. isolate EM1)
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Phytomonas sp. isolate Hart1 (GCA_000982615.1) (Phytomonas sp. isolate Hart1)
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Leptomonas seymouri str. ATCC 30220 (GCA_001299535.1) (Leptomonas seymouri)
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Leptomonas pyrrhocoris str. H10 (GCA_001293395.1) (Leptomonas pyrrhocoris)
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-
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Leishmania donovani str. BPK282A1 (GCA_000227135.2) (Leishmania donovani)
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Leishmania infantum (GCA_900500625.1) (Leishmania infantum)
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Leishmania major (Leishmania major strain Friedlin)
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Leishmania panamensis str. MHOM/PA/94/PSC-1 (GCA_000755165.1) (Leishmania panamensis)
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Trypanosoma conorhini (GCA_003719485.1) (Trypanosoma conorhini)
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Trypanosoma theileri (GCA_002087225.1) (Trypanosoma theileri)
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Trypanosoma equiperdum (GCA_001457755.2) (Trypanosoma equiperdum)
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Trypanosoma brucei (Trypanosoma brucei)
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Trypanosoma cruzi marinkellei (GCA_000300495.1) (Trypanosoma cruzi marinkellei)
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Trypanosoma rangeli SC58 (GCA_000492115.1) (Trypanosoma rangeli SC58)
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Perkinsela sp. CCAP 1560/4 (GCA_001235845.1) (Perkinsela sp. CCAP 1560/4)
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Spironucleus salmonicida (GCA_000497125.1) (Spironucleus salmonicida)
--------------------
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Giardia lamblia (Giardia lamblia ATCC 50803)
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Kipferlia bialata (GCA_003568945.1) (Kipferlia bialata)
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Plasmodiophora brassicae (GCA_001049375.1) (Plasmodiophora brassicae)
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Bigelowiella natans (Bigelowiella natans CCMP2755)
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Reticulomyxa filosa (GCA_000512085.1) (Reticulomyxa filosa)
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Salpingoeca rosetta str. ATCC 50818 (GCA_000188695.1) (Salpingoeca rosetta)
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Monosiga brevicollis MX1 (GCA_000002865.1) (Monosiga brevicollis MX1)
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Sphaeroforma arctica JP610 (GCA_001186125.1) (Sphaeroforma arctica JP610)
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Capsaspora owczarzaki ATCC 30864 (GCA_000151315.2) (Capsaspora owczarzaki ATCC 30864)
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Fonticula alba str. ATCC 38817 (GCA_000388065.2) (Fonticula alba)
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Dictyostelium discoideum (Dictyostelium discoideum AX4)
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Dictyostelium purpureum str. QSDP1 (GCA_000190715.1) (Dictyostelium purpureum)
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Tieghemostelium lacteum str. TK (GCA_001606155.1) (Tieghemostelium lacteum)
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Cavenderia fasciculata str. SH3 (GCA_000203815.1) (Cavenderia fasciculata)
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Planoprotostelium fungivorum str. Jena (GCA_003024175.1) (Planoprotostelium fungivorum)
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Entamoeba invadens IP1 (GCA_000330505.1) (Entamoeba invadens IP1)
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Entamoeba histolytica (Entamoeba histolytica HM-1:IMSS)
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Entamoeba dispar SAW760 (GCA_000209125.2) (Entamoeba dispar SAW760)
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Entamoeba nuttalli P19 (GCA_000257125.1) (Entamoeba nuttalli P19)
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Acanthamoeba castellanii str. Neff (GCA_000313135.1) (Acanthamoeba castellanii str. Neff)
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Oxytricha trifallax str. JRB310 (GCA_000711775.1) (Oxytricha trifallax Oxytricha_MIC_v2.0)
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Stylonychia lemnae str. 130c (GCA_000751175.1) (Stylonychia lemnae)
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Tetrahymena thermophila (Tetrahymena thermophila SB210)
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Ichthyophthirius multifiliis str. G5 (GCA_000220395.1) (Ichthyophthirius multifiliis)
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Pseudocohnilembus persalinus (GCA_001447515.1) (Pseudocohnilembus persalinus)
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Paramecium tetraurelia (Paramecium tetraurelia)
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Stentor coeruleus (GCA_001970955.1) (Stentor coeruleus)
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Theileria parva str. Muguga (GCA_000165365.1) (Theileria parva)
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Theileria equi strain WA (GCA_000342415.1) (Theileria equi strain WA)
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Theileria orientalis strain Shintoku (GCA_000740895.1) (Theileria orientalis strain Shintoku)
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Babesia bigemina str. Bond (GCA_000981445.1) (Babesia bigemina)
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Babesia bovis str. T2Bo (GCA_000165395.1) (Babesia bovis)
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Babesia ovata str. Miyake (GCA_002897235.1) (Babesia ovata)
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Babesia sp. Xinjiang (GCA_002095265.1) (Babesia sp. Xinjiang)
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Plasmodium relictum (GCA_900005765.1) (Plasmodium relictum)
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Plasmodium gallinaceum (GCA_900005855.1) (Plasmodium gallinaceum)
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Plasmodium vinckei petteri str. CR (GCA_000524515.1) (Plasmodium vinckei petteri)
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Plasmodium yoelii yoelii str. 17XNL (GCA_000003085.2) (Plasmodium yoelii yoelii)
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Plasmodium berghei (Plasmodium berghei ANKA)
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Plasmodium chabaudi (Plasmodium chabaudi chabaudi)
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Plasmodium sp. gorilla clade G2 (GCA_900097015.1) (Plasmodium sp. gorilla clade G2)
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Plasmodium gaboni (GCA_001602025.1) (Plasmodium gaboni)
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Plasmodium falciparum (Plasmodium falciparum 3D7)
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Plasmodium reichenowi (GCA_001601855.1) (Plasmodium reichenowi ASM160185v1)
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Plasmodium sp. DRC-Itaito (GCA_900240055.1) (Plasmodium sp. DRC-Itaito PGABG02)
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Plasmodium cynomolgi strain B (GCA_000321355.1) (Plasmodium cynomolgi strain B)
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Plasmodium fragile str. multiple (GCA_000956335.1) (Plasmodium fragile)
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Plasmodium vivax (Plasmodium vivax Salvador I)
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Plasmodium malariae (GCA_900088575.1) (Plasmodium malariae Pmal)
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Plasmodium knowlesi (Plasmodium knowlesi strain H)
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Plasmodium ovale curtisi (GCA_900088565.1) (Plasmodium ovale curtisi Poc2)
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Plasmodium inui San Antonio 1 (GCA_000524495.1) (Plasmodium inui San Antonio 1)
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Plasmodium gonderi (GCA_002157705.1) (Plasmodium gonderi)
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Plasmodium coatneyi (GCA_001680005.1) (Plasmodium coatneyi)
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Eimeria acervulina (GCA_000499425.1) (Eimeria acervulina)
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Eimeria brunetti (GCA_000499725.1) (Eimeria brunetti)
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Eimeria mitis (GCA_000499745.1) (Eimeria mitis)
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Eimeria tenella str. Houghton (GCA_000499545.1) (Eimeria tenella)
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Eimeria praecox (GCA_000499445.1) (Eimeria praecox)
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Eimeria maxima str. Weybridge (GCA_000499605.1) (Eimeria maxima)
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Cyclospora cayetanensis str. CHN_HEN01 (GCA_000769155.2) (Cyclospora cayetanensis)
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Toxoplasma gondii VEG (GCA_000150015.2) (Toxoplasma gondii VEG)
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Toxoplasma gondii ME49 (Toxoplasma gondii ME49)
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Cystoisospora suis str. Wien I (GCA_002600585.1) (Cystoisospora suis)
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Hammondia hammondi str. H.H.34 (GCA_000258005.2) (Hammondia hammondi)
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Besnoitia besnoiti str. Bb-Ger1 (GCA_002563875.1) (Besnoitia besnoiti)
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Cryptosporidium muris RN66 (GCA_000006515.1) (Cryptosporidium muris RN66)
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Cryptosporidium parvum Iowa II (GCA_000165345.1) (Cryptosporidium parvum Iowa II)
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Cryptosporidium andersoni (GCA_001865355.1) (Cryptosporidium andersoni)
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Cryptosporidium ubiquitum (GCA_001865345.1) (Cryptosporidium ubiquitum)
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Cryptosporidium meleagridis str. UKMEL1 (GCA_001593445.1) (Cryptosporidium meleagridis)
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Gregarina niphandrodes (GCA_000223845.4) (Gregarina niphandrodes)
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Perkinsus marinus ATCC 50983 str. PmCV4CB5 2B3 D4 (GCA_000006405.1) (Perkinsus marinus ATCC 50983)
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Symbiodinium microadriaticum str. CCMP2467 (GCA_001939145.1) (Symbiodinium microadriaticum)
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Thalassiosira oceanica str. CCMP1005 (GCA_000296195.2) (Thalassiosira oceanica)
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Thalassiosira pseudonana (Thalassiosira pseudonana CCMP1335)
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Pseudo-nitzschia multistriata (Pseudo-nitzschia multistriata)
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Fragilariopsis cylindrus CCMP1102 (GCA_001750085.1) (Fragilariopsis cylindrus CCMP1102)
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Phaeodactylum tricornutum (Phaeodactylum tricornutum CCAP 1055/1)
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Pythium aphanidermatum (Pythium aphanidermatum DAOM BR444)
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-
Pythium iwayamai (Pythium iwayamai DAOM BR242034)
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Pythium arrhenomanes (Pythium arrhenomanes ATCC 12531)
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Pythium irregulare (Pythium irregulare DAOM BR486)
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Pythium ultimum (Globisporangium ultimum DAOM BR144)
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Pythium vexans (Phytopythium vexans DAOM BR484)
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Aphanomyces astaci str. APO3 (GCA_000520075.1) (Aphanomyces astaci Apha_asta_APO3_V1)
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Aphanomyces invadans str. NJM9701 (GCA_000520115.1) (Aphanomyces invadans Apha_inva_NJM9701_V1)
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Saprolegnia parasitica CBS 223.65 (GCA_000151545.2) (Saprolegnia parasitica CBS 223.65)
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Saprolegnia diclina VS20 (GCA_000281045.1) (Saprolegnia diclina VS20)
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Achlya hypogyna str. ATCC 48635 (GCA_002081595.1) (Achlya hypogyna)
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Thraustotheca clavata str. ATCC 34112 (GCA_002081575.1) (Thraustotheca clavata)
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Phytophthora parasitica (Phytophthora parasitica P1569)
------------
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Phytophthora cactorum str. 10300 (GCA_003287315.1) (Phytophthora cactorum)
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Phytophthora nicotianae (GCA_001482985.1) (Phytophthora nicotianae ASM148298v1)
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Phytophthora palmivora var. palmivora str. sbr112.9 (GCA_002911725.1) (Phytophthora palmivora var. palmivora)
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Phytophthora sojae (Phytophthora sojae)
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Phytophthora ramorum (Phytophthora ramorum)
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Phytophthora kernoviae (Phytophthora kernoviae 00238/432)
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Phytophthora megakarya str. zdho120 (GCA_002215365.1) (Phytophthora megakarya)
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----
Phytophthora lateralis (Phytophthora lateralis MPF4)
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Phytophthora infestans (Phytophthora infestans T30-4)
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Plasmopara halstedii (GCA_900000015.1) (Plasmopara halstedii)
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Nothophytophthora sp. Chile5 (GCA_001712635.2) (Nothophytophthora sp. Chile5)
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Peronospora effusa (GCA_003704535.1) (Peronospora effusa Peff_R14)
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Hyaloperonospora arabidopsidis (Hyaloperonospora arabidopsidis Emoy2)
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Albugo laibachii (Albugo laibachii Nc14)
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Hondaea fermentalgiana (GCA_002897355.1) (Hondaea fermentalgiana)
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Ectocarpus siliculosus str. Ec 32 (CCAP 1310/04) (GCA_000310025.1) (Ectocarpus siliculosus)
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Aureococcus anophagefferens (GCA_000186865.1) (Aureococcus anophagefferens)
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Nannochloropsis gaditana CCMP526 (GCA_000240725.1) (Nannochloropsis gaditana CCMP526)
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Blastocystis hominis str. Singapore isolate B (sub-type 7) (GCA_000151665.1) (Blastocystis hominis)
----------------------------
Tritrichomonas foetus str. K (GCA_001839685.1) (Tritrichomonas foetus)
----------------------------
Emiliania huxleyi (Emiliania huxleyi CCMP1516)
----------------------------
Naegleria gruberi str. NEG-M (GCA_000004985.1) (Naegleria gruberi)
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Thecamonas trahens ATCC 50062 (GCA_000142905.1) (Thecamonas trahens ATCC 50062)