Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Spironucleus salmonicida
-------
Giardia lamblia ATCC 50803
-------
-
Chroomonas mesostigmatica CCMP1168
--------------------
----
Guillardia theta CCMP2712
-----------
Cryptomonas paramecium
-------
-
Paulinella chromatophora
-------
----
Plasmodiophora brassicae
----------------
----
-
Bigelowiella natans CCMP2755
----------
Lotharella oceanica
---------------
Reticulomyxa filosa
-----------
-
Polysphondylium pallidum PN500
-------
----
Cavenderia fasciculata
-------------
-
Dictyostelium discoideum AX4
----------
----
Dictyostelium purpureum
--------------
Tieghemostelium lacteum
------------
----
Entamoeba invadens IP1
---------------
-
Entamoeba nuttalli P19
----------
Entamoeba dispar SAW760
----------
Entamoeba histolytica HM-1:IMSS
-------------------
Acanthamoeba castellanii str. Neff
-------
-
Sphaeroforma arctica JP610
----------
Capsaspora owczarzaki ATCC 30864
--------------------
-
-
Monosiga brevicollis MX1
----------
Salpingoeca rosetta
-----------
Fonticula alba
---------------
-
Leptomonas seymouri
-------
----
Leptomonas pyrrhocoris
-----------------
-
Leishmania panamensis
----------
----
Leishmania braziliensis MHOM/BR/75/M2904
-------------
-
Leishmania donovani
----------
----
Leishmania infantum JPCM5
--------------
Leishmania mexicana MHOM/GT/2001/U1103
-------
--------
Leishmania major strain Friedlin
----------------------
-
Phytomonas sp. isolate EM1
-------------
Phytomonas sp. isolate Hart1
----------------------
-
Strigomonas culicis
----
-------
Angomonas deanei
-------------
Trypanosoma cruzi marinkellei
----------------------
-
Trypanosoma brucei
----------
Trypanosoma rangeli SC58
---------------------------
Perkinsela sp. CCAP 1560/4
---------------------------
Bodo saltans
-----------
-
Oxytricha trifallax oxytricha_asm_v1.1
-------
----
Stylonychia lemnae
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-
Ichthyophthirius multifiliis
-----------
----
----
Tetrahymena thermophila SB210
-----------------
Paramecium tetraurelia
-----------------
Pseudocohnilembus persalinus
----------------------
Stentor coeruleus
----------
Babesia microti strain RI
----------
-
Babesia bigemina
----------
----
Babesia bovis
----------------
Theileria equi strain WA
-------------
-
Theileria orientalis strain Shintoku
-------------
Theileria parva
-------------
Theileria annulata
-------------
Plasmodium gaboni
--------------
----
-
Plasmodium falciparum 3D7
-------------------
Plasmodium reichenowi PREICH001
-
----------------
Plasmodium vinckei petteri
----------------
-
Plasmodium chabaudi chabaudi PCHAS01
-------------------
Plasmodium berghei ANKA
-------------------
Plasmodium yoelii yoelii
-------------
----
Plasmodium cynomolgi strain B
----------------
Plasmodium inui San Antonio 1
----------------
Plasmodium vivax
----
-------
-
Plasmodium fragile
----------------
Plasmodium ovale curtisi Poc1
----------------
Plasmodium knowlesi strain H ASM635v1
-------
-------
Plasmodium malariae
-----------------
Plasmodium coatneyi
-------------
Eimeria brunetti
-------------
Eimeria tenella ASM283v1
-------------
Eimeria mitis
-------------
-
Eimeria maxima
----------------
Eimeria acervulina
-------------
----
Eimeria necatrix
-------------------
Eimeria praecox
--------------------
Cyclospora cayetanensis
-------------
-----
-
Hammondia hammondi
-------------------
Toxoplasma gondii ME49
-------------------
Cryptosporidium parvum Iowa II
----------
--------
-
Cryptosporidium andersoni
-------------
Cryptosporidium muris RN66
-------------
Cryptosporidium ubiquitum
----------------------
Gregarina niphandrodes
---------------------------
Vitrella brassicaformis CCMP3155
---------------------------
Perkinsus marinus ATCC 50983
-------
-
Thalassiosira oceanica
-----------
----
Thalassiosira pseudonana CCMP1335
--------------
Phaeodactylum tricornutum CCAP 1055/1
----------
-
Saprolegnia diclina VS20
----------
----
Saprolegnia parasitica CBS 223.65
-------------
-
Aphanomyces invadans
-------------
Aphanomyces astaci
--------------
-
Albugo laibachii Nc14
-------------
Albugo candida
-------------
-
Plasmopara halstedii
----------------
Hyaloperonospora arabidopsidis Emoy2
----------------
Phytophthora infestans T30-4
-------
-------
Phytophthora nicotianae ASM148298v1
------------
----
----
Phytophthora kernoviae 00238/432
-------------
-
Phytophthora lateralis MPF4
----------------
Phytophthora ramorum
----------------
Phytophthora parasitica P1569
----------------
Phytophthora sojae
-----------------
Pythium vexans DAOM BR484
-------------
Pythium ultimum DAOM BR144
-------------
Pythium irregulare DAOM BR486
--------------
-
Pythium aphanidermatum DAOM BR444
----------
Pythium iwayamai DAOM BR242034
----------
Pythium arrhenomanes ATCC 12531
-------------------
Blastocystis hominis
-------------------
Aureococcus anophagefferens
-------------------
Nannochloropsis gaditana CCMP526
----------------------------
Emiliania huxleyi CCMP1516
----------------------------
Trichomonas vaginalis G3
----------------------------
Thecamonas trahens ATCC 50062
----------------------------
Naegleria gruberi