Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
-
Guillardia theta CCMP2712
--------------------
----
Chroomonas mesostigmatica CCMP1168
-----------
Cryptomonas paramecium
------------------------
-
Spironucleus salmonicida
-------
Giardia lamblia ATCC 50803
-------
-
Lotharella oceanica
-------
----
Bigelowiella natans CCMP2755
----------------
--------
Plasmodiophora brassicae
--------------
Paulinella chromatophora
---------------
Reticulomyxa filosa
-------
-
Monosiga brevicollis MX1
----------
Salpingoeca rosetta
--------------------
-
-
Capsaspora owczarzaki ATCC 30864
----------
Sphaeroforma arctica JP610
-----------
Fonticula alba
-------------------
-
Phytomonas sp. isolate Hart1
----------
Phytomonas sp. isolate EM1
-------------------
-
Strigomonas culicis
----------
Angomonas deanei
--------------
-
Leishmania panamensis
----------
----
Leishmania braziliensis MHOM/BR/75/M2904
-------
----------
-
Leishmania donovani
----------
----
----
Leishmania infantum JPCM5
--------------------
Leishmania mexicana MHOM/GT/2001/U1103
--------------------
Leishmania major strain Friedlin
---------------------
-
Leptomonas seymouri
----
-------
Leptomonas pyrrhocoris
-------------
Trypanosoma rangeli SC58
----------------------
-
Trypanosoma cruzi marinkellei
----------
Trypanosoma brucei
---------------------------
Perkinsela sp. CCAP 1560/4
---------------------------
Bodo saltans
-------
Dictyostelium discoideum AX4
-------
-
Dictyostelium fasciculatum
-------
----
Dictyostelium lacteum
-------------
Dictyostelium purpureum
--------------
Polysphondylium pallidum PN500
----------------
----
Entamoeba nuttalli P19
-----------
-
Entamoeba histolytica HM-1:IMSS
----------
Entamoeba invadens IP1
----------
Entamoeba dispar SAW760
---------------
Acanthamoeba castellanii str. Neff
-----------
-
Oxytricha trifallax
-------
----
Stylonychia lemnae
-------------
-
Ichthyophthirius multifiliis
-----------
----
----
Tetrahymena thermophila SB210
-----------------
Paramecium tetraurelia
-----------------
Pseudocohnilembus persalinus
----------------------
Stentor coeruleus
----------
Babesia bovis
----------
-
Babesia microti strain RI
----------
----
Babesia bigemina
----------------
Theileria orientalis strain Shintoku
-------------
-
Theileria parva
-------------
Theileria equi strain WA
-------------
Theileria annulata
-------------
Plasmodium reichenowi
--------------
----
-
Plasmodium gaboni
-------------------
Plasmodium falciparum 3D7
-
----------------
Plasmodium berghei ANKA
----------------
-
Plasmodium chabaudi chabaudi
-------------------
Plasmodium yoelii yoelii
-------------------
Plasmodium vinckei petteri
-------------
----
Plasmodium ovale curtisi
----------------
Plasmodium malariae
----------------
Plasmodium cynomolgi strain B
----
-------
-
Plasmodium fragile
----------------
Plasmodium knowlesi strain H
----------------
Plasmodium inui San Antonio 1
-------
-------
Plasmodium vivax
-----------------
Plasmodium coatneyi
-------------
Eimeria praecox
-------------
Eimeria mitis
-------------
Eimeria tenella
-------------
-
Eimeria necatrix
----------------
Eimeria maxima
-------------
----
Eimeria acervulina
-------------------
Eimeria brunetti
--------------------
Cyclospora cayetanensis
-------------
-----
-
Toxoplasma gondii ME49
-------------------
Hammondia hammondi
-------------------
Cryptosporidium muris RN66
----------
--------
-
Cryptosporidium parvum Iowa II
-------------
Cryptosporidium ubiquitum
-------------
Cryptosporidium andersoni
----------------------
Gregarina niphandrodes
---------------------------
Vitrella brassicaformis CCMP3155
---------------------------
Perkinsus marinus ATCC 50983
-------
-
Thalassiosira pseudonana CCMP1335
-----------
----
Thalassiosira oceanica
--------------
Phaeodactylum tricornutum CCAP 1055/1
----------
-
Saprolegnia diclina VS20
----------
----
Saprolegnia parasitica CBS 223.65
-------------
-
Aphanomyces invadans
-------------
Aphanomyces astaci
--------------
-
Albugo laibachii Nc14
-------------
Albugo candida
-------------
-
Plasmopara halstedii
----------------
Hyaloperonospora arabidopsidis Emoy2
----------------
Phytophthora nicotianae
-------
-------
Phytophthora parasitica P1569
------------
----
----
Phytophthora lateralis MPF4
-------------
-
Phytophthora sojae
----------------
Phytophthora kernoviae 00238/432
----------------
Phytophthora ramorum
----------------
Phytophthora infestans T30-4
-----------------
Pythium vexans DAOM BR484
-------------
Pythium ultimum DAOM BR144
-------------
Pythium arrhenomanes ATCC 12531
--------------
-
Pythium aphanidermatum DAOM BR444
----------
Pythium iwayamai DAOM BR242034
----------
Pythium irregulare DAOM BR486
-------------------
Blastocystis hominis
-------------------
Nannochloropsis gaditana CCMP526
-------------------
Aureococcus anophagefferens
----------------------------
Naegleria gruberi
----------------------------
Thecamonas trahens ATCC 50062
----------------------------
Trichomonas vaginalis G3
----------------------------
Emiliania huxleyi CCMP1516