Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
------------------------
-
Spironucleus salmonicida
-------
Giardia lamblia ATCC 50803
-------
-
Bigelowiella natans CCMP2755
-------
----
Lotharella oceanica
----------------
--------
Paulinella chromatophora
--------------
Plasmodiophora brassicae
---------------
Reticulomyxa filosa
-------
-
Guillardia theta CCMP2712
--------------------
----
Chroomonas mesostigmatica CCMP1168
-----------
Cryptomonas paramecium
-------
-
Capsaspora owczarzaki ATCC 30864
----------
Sphaeroforma arctica JP610
--------------------
-
-
Salpingoeca rosetta
----------
Monosiga brevicollis MX1
-----------
Fonticula alba
-------
Dictyostelium discoideum AX4
-------
-
Dictyostelium purpureum
-------
----
Dictyostelium lacteum
-------------
Dictyostelium fasciculatum
--------------
Polysphondylium pallidum PN500
----------------
----
Entamoeba invadens IP1
-----------
-
Entamoeba nuttalli P19
----------
Entamoeba histolytica HM-1:IMSS
----------
Entamoeba dispar SAW760
---------------
Acanthamoeba castellanii str. Neff
-----------
-
Leishmania braziliensis MHOM/BR/75/M2904
-------
----
Leishmania panamensis
-------------
-
Leishmania donovani
-------
----
----
Leishmania infantum JPCM5
-----------------
Leishmania mexicana MHOM/GT/2001/U1103
-----------------
Leishmania major strain Friedlin
------------------
-
Leptomonas seymouri
----------
Leptomonas pyrrhocoris
-------
-------------
-
Phytomonas sp. isolate EM1
-------------
Phytomonas sp. isolate Hart1
----------------------
-
Angomonas deanei
-------------
Strigomonas culicis
----
-------
Trypanosoma rangeli SC58
----------------------
-
Trypanosoma cruzi marinkellei
----------
Trypanosoma brucei
---------------------------
Perkinsela sp. CCAP 1560/4
---------------------------
Bodo saltans
-----------
-
Oxytricha trifallax
-------
----
Stylonychia lemnae
-------------
-
Tetrahymena thermophila SB210
-----------
----
----
Ichthyophthirius multifiliis
-----------------
Paramecium tetraurelia
-----------------
Pseudocohnilembus persalinus
----------------------
Stentor coeruleus
--------------
-
Toxoplasma gondii ME49
-------------
Hammondia hammondi
-------------
Eimeria necatrix
-------------
Eimeria acervulina
-------------
Eimeria mitis
----------
----
-
Eimeria brunetti
-------------------
Eimeria tenella
-------------
----
Eimeria praecox
-------------------
Eimeria maxima
----------
-----------
Cyclospora cayetanensis
-
----------------
Cryptosporidium muris RN66
--------------------
-
Cryptosporidium parvum Iowa II
----------------
Cryptosporidium andersoni
----------------
Cryptosporidium ubiquitum
-------------------------
Gregarina niphandrodes
-------------
Babesia microti strain RI
-------
----
-
Babesia bovis
----
-------
----
Babesia bigemina
-------------------
Theileria parva
----------------
-
Theileria equi strain WA
----------------
Theileria orientalis strain Shintoku
----------------
Theileria annulata
----------------
Plasmodium falciparum 3D7
--------------
----
-
Plasmodium gaboni
----------------
Plasmodium reichenowi
----------------
Plasmodium yoelii yoelii
-------------
-
Plasmodium vinckei petteri
----------------
Plasmodium berghei ANKA
----------------
Plasmodium chabaudi chabaudi
----------
----
Plasmodium knowlesi strain H
-------------
Plasmodium ovale curtisi
-------------
Plasmodium vivax
----------
-
Plasmodium malariae
-------------
Plasmodium inui San Antonio 1
-------------
Plasmodium fragile
-------------
Plasmodium cynomolgi strain B
--------------
Plasmodium coatneyi
---------------------------
Vitrella brassicaformis CCMP3155
---------------------------
Perkinsus marinus ATCC 50983
-------
-
Thalassiosira pseudonana CCMP1335
-----------
----
Thalassiosira oceanica
--------------
Phaeodactylum tricornutum CCAP 1055/1
----------
-
Saprolegnia diclina VS20
----------
----
Saprolegnia parasitica CBS 223.65
-------------
-
Aphanomyces invadans
-------------
Aphanomyces astaci
--------------
-
Albugo laibachii Nc14
-------------
Albugo candida
-------------
-
Hyaloperonospora arabidopsidis Emoy2
----------------
Plasmopara halstedii
----------------
Phytophthora nicotianae
-------
-------
Phytophthora infestans T30-4
------------
----
----
Phytophthora ramorum
-------------
-
Phytophthora kernoviae 00238/432
----------------
Phytophthora lateralis MPF4
----------------
Phytophthora parasitica P1569
----------------
Phytophthora sojae
-----------------
Pythium vexans DAOM BR484
-------------
Pythium irregulare DAOM BR486
-------------
Pythium aphanidermatum DAOM BR444
--------------
-
Pythium arrhenomanes ATCC 12531
----------
Pythium ultimum DAOM BR144
----------
Pythium iwayamai DAOM BR242034
-------------------
Nannochloropsis gaditana CCMP526
-------------------
Blastocystis hominis
-------------------
Aureococcus anophagefferens
----------------------------
Trichomonas vaginalis G3
----------------------------
Naegleria gruberi
----------------------------
Emiliania huxleyi CCMP1516
----------------------------
Thecamonas trahens ATCC 50062