Entamoeba histolytica vs Hyaloperonospora arabidopsidis Translated Blat Results

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Entamoeba histolytica (Entamoeba histolytica, JCVI-ESG2-1.0) and Hyaloperonospora arabidopsidis (Hyaloperonospora arabidopsidis, HyaAraEmoy2_2.0) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl Protists release 74. Entamoeba histolytica was used as the reference species. After running Translated Blat, the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.


Number of alignment blocks: 1,788

Genome coverage (bp) Coding exon coverage (bp)
Entamoeba histolytica

Uncovered: 20,505,072 out of 20,835,395
Covered: 330,323 out of 20,835,395

Uncovered: 9,924,551 out of 10,244,611
Matches: 195,235 out of 10,244,611
Mismatches: 124,815 out of 10,244,611
Insertions: 10 out of 10,244,611

Hyaloperonospora arabidopsidis

Uncovered: 78,696,566 out of 78,897,814
Covered: 201,248 out of 78,897,814

Uncovered: 12,986,565 out of 13,171,834
Matches: 112,373 out of 13,171,834
Mismatches: 72,886 out of 13,171,834
Insertions: 10 out of 13,171,834

Configuration parameters

Minimum score (minScore)30
Database type (t)dnax
Query type (q)dnax
Mask out repeats (mask)lower
Mask out repeats on query (qMask)lower

Chunking parameters

Entamoeba histolytica Hyaloperonospora arabidopsidis
Chunk size 1,000,000 1,000,000
Overlap 10,000 10,000
Group set size 100,000,000 100,000,000
Masking options {default_soft_masking => 1} {default_soft_masking => 1}