Custom data sets

If you want to filter or customise your download, please try Biomart, a web-based querying tool.

FTP Download

Detailed information about the available data and file formats can be found here.

The data can also be downloaded directly from the Ensembl Protists FTP server.

Database dumps

Entire databases can be downloaded from our FTP site in a variety of formats. Please be aware that some of these files can run to many gigabytes of data.

Looking for MySQL dumps to install databases locally? Instructions for loading MySQL dumps onto a local MySQL server can be found on the Ensembl website.

Each directory on ftp.ensemblgenomes.org contains a README file, explaining the directory structure.

Programatic data access

Data can be accessed programatically in a number of ways, including the REST service and Perl API. For full details see the Programatic access documenation.

Multi-species data

DatabaseMySQLTSVEMFMAFXML
Pan_compara Multi-speciesMySQLTSVEMFXML
Protists Multi-speciesMySQLTSVEMFMAFXML
Ensembl MartMySQL

Single species data

SpeciesDNAcDNACDSncRNAProteinEMBLGENBANKMySQLTSVGTFGFF3GVFVCFVEP
Acanthamoeba castellanii_str_neff_gca_000313135FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Achlya hypogyna_gca_002081595FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Albugo laibachiiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Angomonas deanei_gca_000442575FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_000520075FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_002197585FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546545FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546565FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546585FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546605FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546625FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546765FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546785FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546805FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003546825FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces astaci_gca_003666305FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces invadans_gca_000520115FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aphanomyces invadans_gca_003546525FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Aureococcus anophagefferens_gca_000186865FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Babesia bigemina_gca_000981445FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Babesia bovis_gca_000165395FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Babesia ovata_gca_002897235FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Babesia sp_xinjiang_gca_002095265FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Besnoitia besnoiti_gca_002563875FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Bigelowiella natansFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Blastocystis hominis_gca_000151665FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Capsaspora owczarzaki_atcc_30864_gca_000151315FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cavenderia fasciculata_gca_000203815FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Chroomonas mesostigmatica_ccmp1168_gca_000286095FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cryptomonas paramecium_gca_000194455FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cryptosporidium andersoni_gca_001865355FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cryptosporidium meleagridis_gca_001593445FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cryptosporidium muris_rn66_gca_000006515FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cryptosporidium parvum_iowa_ii_gca_000165345FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cryptosporidium ubiquitum_gca_001865345FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cyclospora cayetanensis_gca_000769155FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Cystoisospora suis_gca_002600585FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Dictyostelium discoideumFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3VEP
Dictyostelium purpureum_gca_000190715FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Ectocarpus siliculosus_gca_000310025FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Eimeria acervulina_gca_000499425FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Eimeria brunetti_gca_000499725FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Eimeria maxima_gca_000499605FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Eimeria mitis_gca_000499745FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Eimeria praecox_gca_000499445FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Eimeria tenella_gca_000499545FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Emiliania huxleyiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba dispar_saw760_gca_000209125FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba histolyticaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba histolytica_gca_001662325FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba histolytica_hm_1_imss_a_gca_000365475FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba histolytica_hm_1_imss_b_gca_000344925FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba histolytica_hm_3_imss_gca_000346345FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba histolytica_ku27_gca_000338855FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba invadens_ip1_gca_000330505FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Entamoeba nuttalli_p19_gca_000257125FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Fonticula alba_gca_000388065FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Fragilariopsis cylindrus_ccmp1102_gca_001750085FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Giardia intestinalis_assemblage_b_gca_001543975FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Giardia intestinalis_atcc_50581_gca_000182405FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Giardia intestinalis_gca_000498715FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Giardia intestinalis_gca_000498735FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Giardia lambliaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Giardia lamblia_p15_gca_000182665FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Gregarina niphandrodes_gca_000223845FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Guillardia thetaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Hammondia hammondi_gca_000258005FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Hondaea fermentalgiana_gca_002897355FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Hyaloperonospora arabidopsidisFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Ichthyophthirius multifiliis_gca_000220395FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Kipferlia bialata_gca_003568945FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Leishmania donovani_gca_000227135FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Leishmania infantum_gca_900500625FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Leishmania majorFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Leishmania panamensis_gca_000755165FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Leptomonas pyrrhocoris_gca_001293395FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Leptomonas seymouri_gca_001299535FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Monosiga brevicollis_mx1_gca_000002865FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Naegleria gruberi_gca_000004985FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Nannochloropsis gaditana_ccmp526_gca_000240725FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Nannochloropsis gaditana_gca_000569095FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Nothophytophthora sp_chile5_gca_001712635FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Oxytricha trifallax_gca_000295675_gca_000295675FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Oxytricha trifallax_gca_000711775FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Paramecium tetraureliaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Perkinsela sp_ccap_1560_4_gca_001235845FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Perkinsus marinus_atcc_50983_gca_000006405FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Peronospora effusa_gca_003704535FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Peronospora effusa_gca_003843895FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phaeodactylum tricornutumFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(variation)
TSVGTFGFF3GVFVCFVEP
Phytomonas sp_isolate_em1_gca_000582765FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytomonas sp_isolate_hart1_gca_000982615FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora cactorum_gca_003287315FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora infestansFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
MySQL(variation)
TSVGTFGFF3GVFVCFVEP
Phytophthora kernoviaeFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora kernoviae_gca_001707905FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora kernoviae_gca_001712645FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora kernoviae_gca_001712705FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora kernoviae_gca_001712715FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora lateralisFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora megakarya_gca_002215365FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora nicotianae_gca_001482985FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora nicotianae_gca_001483015FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora palmivora_var_palmivora_gca_002911725FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasiticaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_cj01a1_gca_000365545FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_gca_000509465FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_gca_000509485FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_gca_000509505FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_gca_000509525FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_inra_310_gca_000247585FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_p10297_gca_000367145FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora parasitica_p1976_gca_000365525FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora ramorumFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Phytophthora sojaeFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3VEP
Planoprotostelium fungivorum_gca_003024175FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodiophora brassicae_gca_001049375FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium bergheiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium berghei_gca_900044335FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium berghei_gca_900088445FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium berghei_gca_900095585FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium berghei_gca_900095635FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium chabaudiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium chabaudi_adami_gca_900095565FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium chabaudi_chabaudi_gca_900095605FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium coatneyi_gca_001680005FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium cynomolgi_strain_b_gca_000321355FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparumFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_7g8_gca_000150435FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_camp_malaysia_gca_000521115FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_dd2_gca_000149795FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_fch_4_gca_000521155FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_hb3_gca_000149665FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_igh_cr14_gca_000186055FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_malips096_e11_gca_000521035FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_nf135_5_c10_gca_000521075FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_nf54_gca_000401695FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_nf54_gca_002831795FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_palo_alto_uganda_gca_000521095FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_raj116_gca_000186025FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_santa_lucia_gca_000150455FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_tanzania_2000708__gca_000521055FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_ugt5_1_gca_000401715FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium falciparum_vietnam_oak_knoll_fvo__gca_000521015FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium fragile_gca_000956335FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium gaboni_gca_001602025FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium gallinaceum_gca_900005855FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium gonderi_gca_002157705FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium inui_san_antonio_1_gca_000524495FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium knowlesiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium knowlesi_gca_002140095FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium knowlesi_strain_h_gca_900004885FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium malariae_gca_900088575FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium malariae_gca_900090045FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium ovale_curtisi_gca_900088555FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium ovale_curtisi_gca_900088565FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium ovale_gca_900090025FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium ovale_wallikeri_gca_900088485FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium ovale_wallikeri_gca_900088545FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium reichenowi_gca_001601855FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium reichenowi_gca_900097025FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium relictum_gca_900005765FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium sp_drc_itaito_gca_900240055FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium sp_drc_itaito_gca_900257145FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium sp_gorilla_clade_g2_gca_900097015FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vinckei_petteri_gca_000524515FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vinckei_vinckei_gca_000709005FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vivaxFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vivax_brazil_i_gca_000320645FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vivax_gca_900093555FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vivax_india_vii_gca_000320625FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vivax_mauritania_i_gca_000320665FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium vivax_north_korean_gca_000320685FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium yoelii_17x_gca_000505035FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium yoelii_gca_900002385FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium yoelii_gca_900002395FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmodium yoelii_yoelii_gca_000003085FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Plasmopara halstedii_gca_900000015FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pseudocohnilembus persalinus_gca_001447515FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pseudonitzschia multistriataFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pythium aphanidermatumFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pythium arrhenomanesFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pythium irregulareFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pythium iwayamaiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Pythium ultimumFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3VEP
Pythium vexansFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Reticulomyxa filosa_gca_000512085FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Salpingoeca rosetta_gca_000188695FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Saprolegnia diclina_vs20_gca_000281045FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Saprolegnia parasitica_cbs_223_65_gca_000151545FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Sphaeroforma arctica_jp610_gca_001186125FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Spironucleus salmonicida_gca_000497125FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Stentor coeruleus_gca_001970955FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Strigomonas culicis_gca_000442495FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Stylonychia lemnae_gca_000751175FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Symbiodinium microadriaticum_gca_001939145FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Tetrahymena thermophilaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Thalassiosira oceanica_gca_000296195FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Thalassiosira pseudonanaFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)
MySQL(otherfeatures)
TSVGTFGFF3VEP
Thecamonas trahens_atcc_50062_gca_000142905FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Theileria equi_strain_wa_gca_000342415FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Theileria orientalis_gca_003072525FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Theileria orientalis_gca_003072535FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Theileria orientalis_gca_003072545FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Theileria orientalis_strain_shintoku_gca_000740895FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Theileria parva_gca_000165365FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Thraustotheca clavata_gca_002081575FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Tieghemostelium lacteum_gca_001606155FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondiiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_ari_gca_000250965FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_coug_gca_000338675FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_fou_gca_000224905FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_gab2_2007_gal_dom2_gca_000325525FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_gca_000256705FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_gt1_gca_000149715FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_mas_gca_000224865FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_p89_gca_000224885FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_rub_gca_000224805FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_tgcatbr9_gca_000224825FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_tgcatprc2_gca_000256725FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_vand_gca_000224845FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Toxoplasma gondii_veg_gca_000150015FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Tritrichomonas foetus_gca_001839685FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma bruceiFASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma brucei_equiperdum_gca_003543875FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma conorhini_gca_003719485FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_dm28c_gca_000496795FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_gca_000209065FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_gca_003177095FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_gca_003177105FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_gca_003719155FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_gca_003719455FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma cruzi_marinkellei_gca_000300495FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma equiperdum_gca_001457755FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma rangeli_gca_003719475FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma rangeli_sc58_gca_000492115FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP
Trypanosoma theileri_gca_002087225FASTA (DNA)FASTA (cDNA)FASTA (CDS)FASTA (ncRNA)FASTA (protein)EMBLGenBankMySQL(core)TSVGTFGFF3VEP

To facilitate storage and download all databases are GNU Zip (gzip, *.gz) compressed.

Metadata

Detailed metadata on the genomes provided by Ensembl Genomes is available from the FTP site in TSV, JSON and XML formats (format details).

Ensembl Protists: TSV | JSON | XML

Ensembl Genomes (all divisions): TSV | JSON | XML

About the data

The following types of data dumps are available on the FTP site.

FASTA
FASTA sequence databases of Ensembl gene, transcript and protein model predictions. Since the FASTA format does not permit sequence annotation, these database files are mainly intended for use with local sequence similarity search algorithms. Each directory has a README file with a detailed description of the header line format and the file naming conventions.
DNA
Masked and unmasked genome sequences associated with the assembly (contigs, chromosomes etc.).
The header line in an FASTA dump files containing DNA sequence consists of the following attributes : coord_system:version:name:start:end:strand This coordinate-system string is used in the Ensembl API to retrieve slices with the SliceAdaptor.
CDS
Coding sequences for Ensembl or ab initio predicted genes.
cDNA
cDNA sequences for Ensembl or ab initio predicted genes.
Peptides
Protein sequences for Ensembl or ab initio predicted genes.
RNA
Non-coding RNA gene predictions.
Annotated sequence
Flat files allow more extensive sequence annotation by means of feature tables and contain thus the genome sequence as annotated by the automated Ensembl genome annotation pipeline. Each nucleotide sequence record in a flat file represents a 1Mb slice of the genome sequence. Flat files are broken into chunks of 1000 sequence records for easier downloading.
EMBL
Ensembl database dumps in EMBL nucleotide sequence database format
GenBank
Ensembl database dumps in GenBank nucleotide sequence database format
MySQL
All Ensembl MySQL databases are available in text format as are the SQL table definition files. These can be imported into any SQL database for a local installation of a mirror site. Generally, the FTP directory tree contains one directory per database. For more information about these databases and their Application Programming Interfaces (or APIs) see the API section.
GTF
Gene sets for each species. These files include annotations of both coding and non-coding genes. This file format is described here.
EMF flatfile dumps (variation and comparative data)

Alignments of resequencing data are available for several species as Ensembl Multi Format (EMF) flatfile dumps. The accompanying README file describes the file format.

Also, the same format is used to dump whole-genome multiple alignments as well as gene-based multiple alignments and phylogentic trees used to infer Ensembl orthologues and paralogues. These files are available in the ensembl_compara database which will be found in the mysql directory.

MAF (comparative data)

MAF files are provided for all pairwise alignments. The MAF file format is described here.

GVF (variation data)
GVF (Genome Variation Format) is a simple tab-delimited format derived from GFF3 for variation positions across the genome. There are GVF files for different types of variation data (e.g. somatic variants, structural variants etc). For more information see the "README" files in the GVF directory.
BED format files (comparative data)

Constrained elements calculated using GERP are available in BED format. For more information see the accompanying README file.

BED format is a simple line-based format. The first 3 mandatory columns are:

  • chromosome name (may start with 'chr' for compliance with UCSC)
  • start position. This is a 0-based position
  • end position.

More information on the BED file format